BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m22
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9815-3p MIMAT0037033 Sus scrofa miR-9815-3p 14 20
mdv2-miR-M22-5p MIMAT0004465 Mareks disease miR-M22-5p 14 20
gma-miR9750 MIMAT0036378 Glycine max miR9750 12 80
stu-miR7995 MIMAT0030881 Solanum tuberosum miR7995 12 80
prd-miR-7943-5p MIMAT0030746 Panagrellus redivivus miR-7943-5p 12 80
bdi-miR7720-3p MIMAT0030165 Brachypodium distachyon miR7720-3p 12 80
cbn-miR-7630 MIMAT0029672 Caenorhabditis brenneri miR-7630 12 80
oan-miR-7435-3p MIMAT0029025 Ornithorhynchus anatinus miR-7435-3p 12 80
mml-miR-7202-3p MIMAT0028369 Macaca mulatta miR-7202-3p 12 80
mmu-miR-6898-5p MIMAT0027696 Mus musculus miR-6898-5p 12 80
mmu-miR-6401 MIMAT0025153 Mus musculus miR-6401 12 80
mmu-miR-6380 MIMAT0025126 Mus musculus miR-6380 12 80
ggo-miR-92b MIMAT0024120 Gorilla gorilla miR-92b 12 80
spu-miR-4855 MIMAT0020078 Strongylocentrotus purpuratus miR-4855 12 80
spu-miR-4849 MIMAT0020072 Strongylocentrotus purpuratus miR-4849 12 80
hsa-miR-4672 MIMAT0019754 Homo sapiens miR-4672 12 80
hsa-miR-3941 MIMAT0018357 Homo sapiens miR-3941 12 80
tca-miR-3860-3p MIMAT0018793 Tribolium castaneum miR-3860-3p 12 80
rno-miR-3572 MIMAT0017853 Rattus norvegicus miR-3572 12 80
bmo-miR-3369 MIMAT0015555 Bombyx mori miR-3369 12 80
cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a 12 80
cel-miR-2209c-5p MIMAT0011433 Caenorhabditis elegans miR-2209c-5p 12 80
cel-miR-2209a-5p MIMAT0011431 Caenorhabditis elegans miR-2209a-5p 12 80
nve-miR-2024a-3p MIMAT0009758 Nematostella vectensis miR-2024a-3p 12 80
gga-miR-1793 MIMAT0007707 Gallus gallus miR-1793 12 80
cin-let-7a-1-3p MIMAT0015247 Ciona intestinalis let-7a-1-3p 12 80
>ssc-miR-9815-3p MIMAT0037033 Sus scrofa miR-9815-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttacac 7
|||||||
Sbjct: 8 cttacac 2
>mdv2-miR-M22-5p MIMAT0004465 Mareks disease miR-M22-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttacac 7
|||||||
Sbjct: 2 cttacac 8
>gma-miR9750 MIMAT0036378 Glycine max miR9750
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttaca 6
||||||
Sbjct: 6 cttaca 1
>stu-miR7995 MIMAT0030881 Solanum tuberosum miR7995
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>prd-miR-7943-5p MIMAT0030746 Panagrellus redivivus miR-7943-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttaca 6
||||||
Sbjct: 3 cttaca 8
>bdi-miR7720-3p MIMAT0030165 Brachypodium distachyon miR7720-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 3 ttacac 8
>cbn-miR-7630 MIMAT0029672 Caenorhabditis brenneri miR-7630
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>oan-miR-7435-3p MIMAT0029025 Ornithorhynchus anatinus
miR-7435-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 3 ttacac 8
>mml-miR-7202-3p MIMAT0028369 Macaca mulatta miR-7202-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 3 ttacac 8
>mmu-miR-6898-5p MIMAT0027696 Mus musculus miR-6898-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttaca 6
||||||
Sbjct: 6 cttaca 1
>mmu-miR-6401 MIMAT0025153 Mus musculus miR-6401
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>mmu-miR-6380 MIMAT0025126 Mus musculus miR-6380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttaca 6
||||||
Sbjct: 6 cttaca 1
>ggo-miR-92b MIMAT0024120 Gorilla gorilla miR-92b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 3 ttacac 8
>spu-miR-4855 MIMAT0020078 Strongylocentrotus purpuratus
miR-4855
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttacac 7
||||||
Sbjct: 7 ttacac 2
>spu-miR-4849 MIMAT0020072 Strongylocentrotus purpuratus
miR-4849
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttacac 7
||||||
Sbjct: 7 ttacac 2
>hsa-miR-4672 MIMAT0019754 Homo sapiens miR-4672
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>hsa-miR-3941 MIMAT0018357 Homo sapiens miR-3941
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>tca-miR-3860-3p MIMAT0018793 Tribolium castaneum miR-3860-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttacac 7
||||||
Sbjct: 8 ttacac 3
>rno-miR-3572 MIMAT0017853 Rattus norvegicus miR-3572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>bmo-miR-3369 MIMAT0015555 Bombyx mori miR-3369
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttaca 6
||||||
Sbjct: 3 cttaca 8
>cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttaca 6
||||||
Sbjct: 6 cttaca 1
>cel-miR-2209c-5p MIMAT0011433 Caenorhabditis elegans
miR-2209c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttacac 7
||||||
Sbjct: 8 ttacac 3
>cel-miR-2209a-5p MIMAT0011431 Caenorhabditis elegans
miR-2209a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttacac 7
||||||
Sbjct: 8 ttacac 3
>nve-miR-2024a-3p MIMAT0009758 Nematostella vectensis
miR-2024a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttacac 7
||||||
Sbjct: 1 ttacac 6
>gga-miR-1793 MIMAT0007707 Gallus gallus miR-1793
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttaca 6
||||||
Sbjct: 6 cttaca 1
>cin-let-7a-1-3p MIMAT0015247 Ciona intestinalis let-7a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttacac 7
||||||
Sbjct: 7 ttacac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 36
Number of extensions: 34
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
