BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR23
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9365 MIMAT0035182 Eptesicus fuscus miR-9365 14 20
hsa-miR-548bb-5p MIMAT0035703 Homo sapiens miR-548bb-5p 12 80
dvi-miR-987-5p MIMAT0035599 Drosophila virilis miR-987-5p 12 80
efu-miR-9297 MIMAT0034958 Eptesicus fuscus miR-9297 12 80
gra-miR8661 MIMAT0034031 Gossypium raimondii miR8661 12 80
sma-miR-8456-5p MIMAT0033624 Schistosoma mansoni miR-8456-5p 12 80
sma-miR-8418-3p MIMAT0033541 Schistosoma mansoni miR-8418-3p 12 80
str-miR-37b-5p MIMAT0033466 Strongyloides ratti miR-37b-5p 12 80
bbe-miR-200a-3p MIMAT0031606 Branchiostoma belcheri miR-200a-3p 12 80
prd-miR-7923-3p MIMAT0030691 Panagrellus redivivus miR-7923-3p 12 80
bdi-miR7745-5p MIMAT0030230 Brachypodium distachyon miR7745-5p 12 80
ghr-miR7495b MIMAT0029141 Gossypium hirsutum miR7495b 12 80
ghr-miR7495a MIMAT0029140 Gossypium hirsutum miR7495a 12 80
gga-miR-7463-3p MIMAT0029081 Gallus gallus miR-7463-3p 12 80
mdo-miR-7386n-3p MIMAT0028865 Monodelphis domestica miR-7386n-3p 12 80
mml-miR-548j-5p MIMAT0028332 Macaca mulatta miR-548j-5p 12 80
mml-miR-548h-5p MIMAT0028256 Macaca mulatta miR-548h-5p 12 80
gga-miR-6590-3p MIMAT0025683 Gallus gallus miR-6590-3p 12 80
hsa-miR-548ay-5p MIMAT0025452 Homo sapiens miR-548ay-5p 12 80
ppy-miR-548h MIMAT0024377 Pongo pygmaeus miR-548h 12 80
ppy-miR-548a MIMAT0024373 Pongo pygmaeus miR-548a 12 80
ggo-miR-548a MIMAT0024278 Gorilla gorilla miR-548a 12 80
ptr-miR-548o MIMAT0024054 Pan troglodytes miR-548o 12 80
hco-miR-5928c MIMAT0023445 Haemonchus contortus miR-5928c 12 80
hco-miR-5928b MIMAT0023438 Haemonchus contortus miR-5928b 12 80
hsa-miR-548ax MIMAT0022474 Homo sapiens miR-548ax 12 80
hsa-miR-548au-5p MIMAT0022291 Homo sapiens miR-548au-5p 12 80
hsa-miR-548as-5p MIMAT0022267 Homo sapiens miR-548as-5p 12 80
hsa-miR-548ar-5p MIMAT0022265 Homo sapiens miR-548ar-5p 12 80
hsa-miR-548aq-5p MIMAT0022263 Homo sapiens miR-548aq-5p 12 80
aca-miR-5392 MIMAT0021690 Anolis carolinensis miR-5392 12 80
asu-miR-5356a-3p MIMAT0021573 Ascaris suum miR-5356a-3p 12 80
asu-lin-4-3p MIMAT0021416 Ascaris suum lin-4-3p 12 80
hsa-miR-548ap-5p MIMAT0021037 Homo sapiens miR-548ap-5p 12 80
hsa-miR-548ao-5p MIMAT0021029 Homo sapiens miR-548ao-5p 12 80
hsa-miR-548am-5p MIMAT0022740 Homo sapiens miR-548am-5p 12 80
hsa-miR-548ak MIMAT0019013 Homo sapiens miR-548ak 12 80
hsa-miR-548ae-5p MIMAT0032115 Homo sapiens miR-548ae-5p 12 80
hsa-miR-548ad-5p MIMAT0032114 Homo sapiens miR-548ad-5p 12 80
hsa-miR-548ab MIMAT0018928 Homo sapiens miR-548ab 12 80
hsa-miR-548o-5p MIMAT0022738 Homo sapiens miR-548o-5p 12 80
hsa-miR-548y MIMAT0018354 Homo sapiens miR-548y 12 80
tca-miR-3811e-5p MIMAT0018664 Tribolium castaneum miR-3811e-5p 12 80
cin-miR-4013b-5p MIMAT0016516 Ciona intestinalis miR-4013b-5p 12 80
ppy-miR-559 MIMAT0016006 Pongo pygmaeus miR-559 12 80
hsa-miR-548w MIMAT0015060 Homo sapiens miR-548w 12 80
tgu-miR-200b-5p MIMAT0014649 Taeniopygia guttata miR-200b-5p 12 80
dsi-miR-987-5p MIMAT0012433 Drosophila simulans miR-987-5p 12 80
dps-miR-2523 MIMAT0012311 Drosophila pseudoobscura miR-2523 12 80
dps-miR-987-5p MIMAT0012235 Drosophila pseudoobscura miR-987-5p 12 80
lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990 12 80
hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990 12 80
ptr-miR-559 MIMAT0008240 Pan troglodytes miR-559 12 80
ptr-miR-548j MIMAT0008224 Pan troglodytes miR-548j 12 80
ptr-miR-548i MIMAT0008223 Pan troglodytes miR-548i 12 80
ptr-miR-548h MIMAT0008222 Pan troglodytes miR-548h 12 80
mdo-miR-340-5p MIMAT0006143 Monodelphis domestica miR-340-5p 12 80
hsa-miR-548i MIMAT0005935 Homo sapiens miR-548i 12 80
hsa-miR-548h-5p MIMAT0005928 Homo sapiens miR-548h-5p 12 80
hsa-miR-548j-5p MIMAT0005875 Homo sapiens miR-548j-5p 12 80
ppt-miR1034 MIMAT0005141 Physcomitrella patens miR1034 12 80
dme-miR-987-5p MIMAT0005504 Drosophila melanogaster miR-987-5p 12 80
dme-miR-982-3p MIMAT0020879 Drosophila melanogaster miR-982-3p 12 80
mtr-miR156c-3p MIMAT0026724 Medicago truncatula miR156c-3p 12 80
mdo-miR-200b-5p MIMAT0026700 Monodelphis domestica miR-200b-5p 12 80
hsa-miR-548d-5p MIMAT0004812 Homo sapiens miR-548d-5p 12 80
hsa-miR-548c-5p MIMAT0004806 Homo sapiens miR-548c-5p 12 80
hsa-miR-548a-5p MIMAT0004803 Homo sapiens miR-548a-5p 12 80
hsa-miR-548b-5p MIMAT0004798 Homo sapiens miR-548b-5p 12 80
hsa-miR-559 MIMAT0003223 Homo sapiens miR-559 12 80
>efu-miR-9365 MIMAT0035182 Eptesicus fuscus miR-9365
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttactt 7
|||||||
Sbjct: 1 cttactt 7
>hsa-miR-548bb-5p MIMAT0035703 Homo sapiens miR-548bb-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>dvi-miR-987-5p MIMAT0035599 Drosophila virilis miR-987-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>efu-miR-9297 MIMAT0034958 Eptesicus fuscus miR-9297
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 3 ttactt 8
>gra-miR8661 MIMAT0034031 Gossypium raimondii miR8661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 3 ttactt 8
>sma-miR-8456-5p MIMAT0033624 Schistosoma mansoni miR-8456-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>sma-miR-8418-3p MIMAT0033541 Schistosoma mansoni miR-8418-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>str-miR-37b-5p MIMAT0033466 Strongyloides ratti miR-37b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 6 ttactt 1
>bbe-miR-200a-3p MIMAT0031606 Branchiostoma belcheri miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttact 6
||||||
Sbjct: 3 cttact 8
>prd-miR-7923-3p MIMAT0030691 Panagrellus redivivus miR-7923-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 7 ttactt 2
>bdi-miR7745-5p MIMAT0030230 Brachypodium distachyon miR7745-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttact 6
||||||
Sbjct: 6 cttact 1
>ghr-miR7495b MIMAT0029141 Gossypium hirsutum miR7495b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>ghr-miR7495a MIMAT0029140 Gossypium hirsutum miR7495a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>gga-miR-7463-3p MIMAT0029081 Gallus gallus miR-7463-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 2 ttactt 7
>mdo-miR-7386n-3p MIMAT0028865 Monodelphis domestica
miR-7386n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttact 6
||||||
Sbjct: 6 cttact 1
>mml-miR-548j-5p MIMAT0028332 Macaca mulatta miR-548j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>mml-miR-548h-5p MIMAT0028256 Macaca mulatta miR-548h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>gga-miR-6590-3p MIMAT0025683 Gallus gallus miR-6590-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>hsa-miR-548ay-5p MIMAT0025452 Homo sapiens miR-548ay-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ppy-miR-548h MIMAT0024377 Pongo pygmaeus miR-548h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ppy-miR-548a MIMAT0024373 Pongo pygmaeus miR-548a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ggo-miR-548a MIMAT0024278 Gorilla gorilla miR-548a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ptr-miR-548o MIMAT0024054 Pan troglodytes miR-548o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hco-miR-5928c MIMAT0023445 Haemonchus contortus miR-5928c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hco-miR-5928b MIMAT0023438 Haemonchus contortus miR-5928b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ax MIMAT0022474 Homo sapiens miR-548ax
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548au-5p MIMAT0022291 Homo sapiens miR-548au-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548as-5p MIMAT0022267 Homo sapiens miR-548as-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ar-5p MIMAT0022265 Homo sapiens miR-548ar-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548aq-5p MIMAT0022263 Homo sapiens miR-548aq-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>aca-miR-5392 MIMAT0021690 Anolis carolinensis miR-5392
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 3 ttactt 8
>asu-miR-5356a-3p MIMAT0021573 Ascaris suum miR-5356a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 3 ttactt 8
>asu-lin-4-3p MIMAT0021416 Ascaris suum lin-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttact 6
||||||
Sbjct: 8 cttact 3
>hsa-miR-548ap-5p MIMAT0021037 Homo sapiens miR-548ap-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ao-5p MIMAT0021029 Homo sapiens miR-548ao-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548am-5p MIMAT0022740 Homo sapiens miR-548am-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ak MIMAT0019013 Homo sapiens miR-548ak
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ae-5p MIMAT0032115 Homo sapiens miR-548ae-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ad-5p MIMAT0032114 Homo sapiens miR-548ad-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548ab MIMAT0018928 Homo sapiens miR-548ab
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548o-5p MIMAT0022738 Homo sapiens miR-548o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548y MIMAT0018354 Homo sapiens miR-548y
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>tca-miR-3811e-5p MIMAT0018664 Tribolium castaneum miR-3811e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttact 6
||||||
Sbjct: 3 cttact 8
>cin-miR-4013b-5p MIMAT0016516 Ciona intestinalis miR-4013b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>ppy-miR-559 MIMAT0016006 Pongo pygmaeus miR-559
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548w MIMAT0015060 Homo sapiens miR-548w
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>tgu-miR-200b-5p MIMAT0014649 Taeniopygia guttata miR-200b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttact 6
||||||
Sbjct: 3 cttact 8
>dsi-miR-987-5p MIMAT0012433 Drosophila simulans miR-987-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>dps-miR-2523 MIMAT0012311 Drosophila pseudoobscura miR-2523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 6 ttactt 1
>dps-miR-987-5p MIMAT0012235 Drosophila pseudoobscura miR-987-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttact 6
||||||
Sbjct: 6 cttact 1
>hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttact 6
||||||
Sbjct: 6 cttact 1
>ptr-miR-559 MIMAT0008240 Pan troglodytes miR-559
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ptr-miR-548j MIMAT0008224 Pan troglodytes miR-548j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ptr-miR-548i MIMAT0008223 Pan troglodytes miR-548i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ptr-miR-548h MIMAT0008222 Pan troglodytes miR-548h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>mdo-miR-340-5p MIMAT0006143 Monodelphis domestica miR-340-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 6 ttactt 1
>hsa-miR-548i MIMAT0005935 Homo sapiens miR-548i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548h-5p MIMAT0005928 Homo sapiens miR-548h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548j-5p MIMAT0005875 Homo sapiens miR-548j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>ppt-miR1034 MIMAT0005141 Physcomitrella patens miR1034
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>dme-miR-987-5p MIMAT0005504 Drosophila melanogaster miR-987-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>dme-miR-982-3p MIMAT0020879 Drosophila melanogaster miR-982-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttactt 7
||||||
Sbjct: 1 ttactt 6
>mtr-miR156c-3p MIMAT0026724 Medicago truncatula miR156c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttact 6
||||||
Sbjct: 3 cttact 8
>mdo-miR-200b-5p MIMAT0026700 Monodelphis domestica miR-200b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttact 6
||||||
Sbjct: 3 cttact 8
>hsa-miR-548d-5p MIMAT0004812 Homo sapiens miR-548d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548c-5p MIMAT0004806 Homo sapiens miR-548c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548a-5p MIMAT0004803 Homo sapiens miR-548a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-548b-5p MIMAT0004798 Homo sapiens miR-548b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
>hsa-miR-559 MIMAT0003223 Homo sapiens miR-559
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttactt 7
||||||
Sbjct: 8 ttactt 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 92
Number of extensions: 91
Number of successful extensions: 70
Number of sequences better than 100.0: 70
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 70
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
