BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sma-miR-8438-5p MIMAT0033580 Schistosoma mansoni miR-8438-5p 14 20
ebv-miR-BART1-5p MIMAT0000999 Epstein Barr miR-BART1-5p 14 20
cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861 12 80
gra-miR8786b MIMAT0034239 Gossypium raimondii miR8786b 12 80
gra-miR8786a MIMAT0034238 Gossypium raimondii miR8786a 12 80
gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765 12 80
atr-miR8609 MIMAT0033900 Amborella trichopoda miR8609 12 80
atr-miR8597 MIMAT0033886 Amborella trichopoda miR8597 12 80
hhi-miR-728 MIMAT0030364 Hippoglossus hippoglossus miR-728 12 80
ipu-miR-728 MIMAT0029523 Ictalurus punctatus miR-728 12 80
mdo-miR-7317-3p MIMAT0028635 Monodelphis domestica miR-7317-3p 12 80
mdo-miR-7251-5p MIMAT0028468 Monodelphis domestica miR-7251-5p 12 80
gma-miR4387e MIMAT0022464 Glycine max miR4387e 12 80
aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p 12 80
hsa-miR-4671-3p MIMAT0019753 Homo sapiens miR-4671-3p 12 80
hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p 12 80
cin-miR-4200-5p MIMAT0016819 Ciona intestinalis miR-4200-5p 12 80
bmo-miR-3210 MIMAT0015389 Bombyx mori miR-3210 12 80
api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054 12 80
dps-miR-957-5p MIMAT0012229 Drosophila pseudoobscura miR-957-5p 12 80
gga-miR-1718 MIMAT0007615 Gallus gallus miR-1718 12 80
gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p 12 80
dme-miR-957-5p MIMAT0020851 Drosophila melanogaster miR-957-5p 12 80
dre-miR-728 MIMAT0003757 Danio rerio miR-728 12 80
rlcv-miR-rL1-6-5p MIMAT0003434 Rhesus lymphocryptovirus miR-rL1-... 12 80
>sma-miR-8438-5p MIMAT0033580 Schistosoma mansoni miR-8438-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttagtg 7
|||||||
Sbjct: 7 cttagtg 1
>ebv-miR-BART1-5p MIMAT0000999 Epstein Barr miR-BART1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttagtg 7
|||||||
Sbjct: 2 cttagtg 8
>cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>gra-miR8786b MIMAT0034239 Gossypium raimondii miR8786b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
>gra-miR8786a MIMAT0034238 Gossypium raimondii miR8786a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
>gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>atr-miR8609 MIMAT0033900 Amborella trichopoda miR8609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 6 cttagt 1
>atr-miR8597 MIMAT0033886 Amborella trichopoda miR8597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>hhi-miR-728 MIMAT0030364 Hippoglossus hippoglossus miR-728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 8 cttagt 3
>ipu-miR-728 MIMAT0029523 Ictalurus punctatus miR-728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 8 cttagt 3
>mdo-miR-7317-3p MIMAT0028635 Monodelphis domestica miR-7317-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
>mdo-miR-7251-5p MIMAT0028468 Monodelphis domestica miR-7251-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 6 cttagt 1
>gma-miR4387e MIMAT0022464 Glycine max miR4387e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
>aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagtg 7
||||||
Sbjct: 8 ttagtg 3
>hsa-miR-4671-3p MIMAT0019753 Homo sapiens miR-4671-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>cin-miR-4200-5p MIMAT0016819 Ciona intestinalis miR-4200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagtg 7
||||||
Sbjct: 6 ttagtg 1
>bmo-miR-3210 MIMAT0015389 Bombyx mori miR-3210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 8 cttagt 3
>api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>dps-miR-957-5p MIMAT0012229 Drosophila pseudoobscura miR-957-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttagt 6
||||||
Sbjct: 1 cttagt 6
>gga-miR-1718 MIMAT0007615 Gallus gallus miR-1718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 6 cttagt 1
>gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>dme-miR-957-5p MIMAT0020851 Drosophila melanogaster miR-957-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttagt 6
||||||
Sbjct: 1 cttagt 6
>dre-miR-728 MIMAT0003757 Danio rerio miR-728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttagt 6
||||||
Sbjct: 8 cttagt 3
>rlcv-miR-rL1-6-5p MIMAT0003434 Rhesus lymphocryptovirus
miR-rL1-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 36
Number of extensions: 34
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)