BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ebv-miR-bart1-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sma-miR-8438-5p MIMAT0033580 Schistosoma mansoni miR-8438-5p           14      20
ebv-miR-BART1-5p MIMAT0000999 Epstein Barr miR-BART1-5p                14      20
cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861                    12      80
gra-miR8786b MIMAT0034239 Gossypium raimondii miR8786b                 12      80
gra-miR8786a MIMAT0034238 Gossypium raimondii miR8786a                 12      80
gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765                   12      80
atr-miR8609 MIMAT0033900 Amborella trichopoda miR8609                  12      80
atr-miR8597 MIMAT0033886 Amborella trichopoda miR8597                  12      80
hhi-miR-728 MIMAT0030364 Hippoglossus hippoglossus miR-728             12      80
ipu-miR-728 MIMAT0029523 Ictalurus punctatus miR-728                   12      80
mdo-miR-7317-3p MIMAT0028635 Monodelphis domestica miR-7317-3p         12      80
mdo-miR-7251-5p MIMAT0028468 Monodelphis domestica miR-7251-5p         12      80
gma-miR4387e MIMAT0022464 Glycine max miR4387e                         12      80
aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p             12      80
hsa-miR-4671-3p MIMAT0019753 Homo sapiens miR-4671-3p                  12      80
hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p                  12      80
cin-miR-4200-5p MIMAT0016819 Ciona intestinalis miR-4200-5p            12      80
bmo-miR-3210 MIMAT0015389 Bombyx mori miR-3210                         12      80
api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054                 12      80
dps-miR-957-5p MIMAT0012229 Drosophila pseudoobscura miR-957-5p        12      80
gga-miR-1718 MIMAT0007615 Gallus gallus miR-1718                       12      80
gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p                 12      80
dme-miR-957-5p MIMAT0020851 Drosophila melanogaster miR-957-5p         12      80
dre-miR-728 MIMAT0003757 Danio rerio miR-728                           12      80
rlcv-miR-rL1-6-5p MIMAT0003434 Rhesus lymphocryptovirus miR-rL1-...    12      80
>sma-miR-8438-5p MIMAT0033580 Schistosoma mansoni miR-8438-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cttagtg 7
         |||||||
Sbjct: 7 cttagtg 1
>ebv-miR-BART1-5p MIMAT0000999 Epstein Barr miR-BART1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cttagtg 7
         |||||||
Sbjct: 2 cttagtg 8
>cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>gra-miR8786b MIMAT0034239 Gossypium raimondii miR8786b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 3 ttagtg 8
>gra-miR8786a MIMAT0034238 Gossypium raimondii miR8786a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 3 ttagtg 8
>gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>atr-miR8609 MIMAT0033900 Amborella trichopoda miR8609
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 6 cttagt 1
>atr-miR8597 MIMAT0033886 Amborella trichopoda miR8597
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>hhi-miR-728 MIMAT0030364 Hippoglossus hippoglossus miR-728
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 8 cttagt 3
>ipu-miR-728 MIMAT0029523 Ictalurus punctatus miR-728
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 8 cttagt 3
>mdo-miR-7317-3p MIMAT0028635 Monodelphis domestica miR-7317-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 3 ttagtg 8
>mdo-miR-7251-5p MIMAT0028468 Monodelphis domestica miR-7251-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 6 cttagt 1
>gma-miR4387e MIMAT0022464 Glycine max miR4387e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 3 ttagtg 8
>aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 8 ttagtg 3
>hsa-miR-4671-3p MIMAT0019753 Homo sapiens miR-4671-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>cin-miR-4200-5p MIMAT0016819 Ciona intestinalis miR-4200-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 6 ttagtg 1
>bmo-miR-3210 MIMAT0015389 Bombyx mori miR-3210
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 8 cttagt 3
>api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>dps-miR-957-5p MIMAT0012229 Drosophila pseudoobscura miR-957-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 1 cttagt 6
>gga-miR-1718 MIMAT0007615 Gallus gallus miR-1718
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 6 cttagt 1
>gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 1 ttagtg 6
>dme-miR-957-5p MIMAT0020851 Drosophila melanogaster miR-957-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 1 cttagt 6
>dre-miR-728 MIMAT0003757 Danio rerio miR-728
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cttagt 6
         ||||||
Sbjct: 8 cttagt 3
>rlcv-miR-rL1-6-5p MIMAT0003434 Rhesus lymphocryptovirus
         miR-rL1-6-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttagtg 7
         ||||||
Sbjct: 3 ttagtg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 36
Number of extensions: 34
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)