BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-1175-5p MIMAT0030502 Panagrellus redivivus miR-1175-5p 14 20
hsa-miR-6837-3p MIMAT0027577 Homo sapiens miR-6837-3p 14 20
ppe-miR6285 MIMAT0027316 Prunus persica miR6285 14 20
ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999 14 20
tca-miR-3858-5p MIMAT0018782 Tribolium castaneum miR-3858-5p 14 20
gga-miR-1550-3p MIMAT0007404 Gallus gallus miR-1550-3p 14 20
eca-miR-9073 MIMAT0034618 Equus caballus miR-9073 12 80
gra-miR8633 MIMAT0033979 Gossypium raimondii miR8633 12 80
str-miR-37a-5p MIMAT0033454 Strongyloides ratti miR-37a-5p 12 80
str-miR-1175-5p MIMAT0033376 Strongyloides ratti miR-1175-5p 12 80
str-miR-252b-3p MIMAT0033371 Strongyloides ratti miR-252b-3p 12 80
str-miR-86-5p MIMAT0033354 Strongyloides ratti miR-86-5p 12 80
ssa-miR-183-2-3p MIMAT0032431 Salmo salar miR-183-2-3p 12 80
bma-miR-86 MIMAT0031762 Brugia malayi miR-86 12 80
prd-miR-86-5p MIMAT0030466 Panagrellus redivivus miR-86-5p 12 80
cbn-miR-785 MIMAT0029751 Caenorhabditis brenneri miR-785 12 80
cbn-miR-86 MIMAT0029750 Caenorhabditis brenneri miR-86 12 80
cbr-miR-785b MIMAT0029609 Caenorhabditis briggsae miR-785b 12 80
mdo-miR-7361-3p MIMAT0028735 Monodelphis domestica miR-7361-3p 12 80
mdo-miR-7355-3p MIMAT0028723 Monodelphis domestica miR-7355-3p 12 80
ccr-miR-726 MIMAT0026313 Cyprinus carpio miR-726 12 80
gga-miR-6635-5p MIMAT0025731 Gallus gallus miR-6635-5p 12 80
ptc-miR6472 MIMAT0025211 Populus trichocarpa miR6472 12 80
hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126 12 80
cgr-miR-653 MIMAT0023993 Cricetulus griseus miR-653 12 80
hco-miR-86 MIMAT0023350 Haemonchus contortus miR-86 12 80
aca-miR-726 MIMAT0021986 Anolis carolinensis miR-726 12 80
asu-miR-86-5p MIMAT0021479 Ascaris suum miR-86-5p 12 80
mtr-miR160f MIMAT0021268 Medicago truncatula miR160f 12 80
pma-miR-4545-5p MIMAT0019575 Petromyzon marinus miR-4545-5p 12 80
oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p 12 80
tae-miR395a MIMAT0018222 Triticum aestivum miR395a 12 80
hsa-miR-3611 MIMAT0017988 Homo sapiens miR-3611 12 80
hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p 12 80
cin-miR-4078-3p MIMAT0016646 Ciona intestinalis miR-4078-3p 12 80
cin-miR-4060-5p MIMAT0016608 Ciona intestinalis miR-4060-5p 12 80
sja-miR-31-3p MIMAT0016256 Schistosoma japonicum miR-31-3p 12 80
ppy-miR-1257 MIMAT0016183 Pongo pygmaeus miR-1257 12 80
bmo-miR-3212 MIMAT0015391 Bombyx mori miR-3212 12 80
bmo-miR-3207 MIMAT0015385 Bombyx mori miR-3207 12 80
osa-miR395y MIMAT0014125 Oryza sativa miR395y 12 80
osa-miR395x MIMAT0014124 Oryza sativa miR395x 12 80
zma-miR395p-3p MIMAT0014013 Zea mays miR395p-3p 12 80
zma-miR395o-3p MIMAT0014012 Zea mays miR395o-3p 12 80
zma-miR395n-3p MIMAT0014011 Zea mays miR395n-3p 12 80
zma-miR395m-3p MIMAT0014010 Zea mays miR395m-3p 12 80
zma-miR395l-3p MIMAT0014009 Zea mays miR395l-3p 12 80
zma-miR395k-3p MIMAT0014008 Zea mays miR395k-3p 12 80
zma-miR395j-3p MIMAT0014007 Zea mays miR395j-3p 12 80
zma-miR395i-3p MIMAT0014006 Zea mays miR395i-3p 12 80
zma-miR395h-3p MIMAT0014005 Zea mays miR395h-3p 12 80
zma-miR395g-3p MIMAT0014004 Zea mays miR395g-3p 12 80
zma-miR395f-3p MIMAT0014003 Zea mays miR395f-3p 12 80
zma-miR395e-3p MIMAT0014002 Zea mays miR395e-3p 12 80
zma-miR395d-3p MIMAT0014001 Zea mays miR395d-3p 12 80
rno-miR-653-3p MIMAT0017361 Rattus norvegicus miR-653-3p 12 80
ppc-miR-86 MIMAT0011662 Pristionchus pacificus miR-86 12 80
crm-miR-785 MIMAT0011602 Caenorhabditis remanei miR-785 12 80
crm-miR-86-5p MIMAT0011585 Caenorhabditis remanei miR-86-5p 12 80
sbi-miR395l MIMAT0011356 Sorghum bicolor miR395l 12 80
sbi-miR395k MIMAT0011355 Sorghum bicolor miR395k 12 80
sbi-miR395j MIMAT0011354 Sorghum bicolor miR395j 12 80
sbi-miR395i MIMAT0011353 Sorghum bicolor miR395i 12 80
sbi-miR395h MIMAT0011352 Sorghum bicolor miR395h 12 80
sbi-miR395g MIMAT0011351 Sorghum bicolor miR395g 12 80
sbi-miR395c MIMAT0011350 Sorghum bicolor miR395c 12 80
dre-miR-2192 MIMAT0011312 Danio rerio miR-2192 12 80
sme-miR-2170 MIMAT0011269 Schmidtea mediterranea miR-2170 12 80
sly-miR1916 MIMAT0007908 Solanum lycopersicum miR1916 12 80
bmo-miR-317-3p MIMAT0007906 Bombyx mori miR-317-3p 12 80
mml-miR-653-3p MIMAT0026905 Macaca mulatta miR-653-3p 12 80
hsa-miR-1257 MIMAT0005908 Homo sapiens miR-1257 12 80
mcmv-miR-m01-3-5p MIMAT0005536 Mouse cytomegalovirus miR-m01-3-5p 12 80
smo-miR1080 MIMAT0005230 Selaginella moellendorffii miR1080 12 80
mmu-miR-653-3p MIMAT0017284 Mus musculus miR-653-3p 12 80
cbr-miR-785a MIMAT0004286 Caenorhabditis briggsae miR-785a 12 80
cel-miR-785-3p MIMAT0004220 Caenorhabditis elegans miR-785-3p 12 80
osa-miR395r MIMAT0003878 Oryza sativa miR395r 12 80
osa-miR395w MIMAT0003877 Oryza sativa miR395w 12 80
osa-miR395v MIMAT0003876 Oryza sativa miR395v 12 80
osa-miR395q MIMAT0003874 Oryza sativa miR395q 12 80
osa-miR395p MIMAT0003873 Oryza sativa miR395p 12 80
osa-miR395n MIMAT0003871 Oryza sativa miR395n 12 80
osa-miR395m MIMAT0003870 Oryza sativa miR395m 12 80
dre-miR-726 MIMAT0003754 Danio rerio miR-726 12 80
hsa-miR-653-3p MIMAT0026625 Homo sapiens miR-653-3p 12 80
rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p 12 80
zma-miR395a-3p MIMAT0001701 Zea mays miR395a-3p 12 80
zma-miR395c-3p MIMAT0001700 Zea mays miR395c-3p 12 80
zma-miR395b-3p MIMAT0001698 Zea mays miR395b-3p 12 80
sbi-miR395e MIMAT0001433 Sorghum bicolor miR395e 12 80
sbi-miR395d MIMAT0001432 Sorghum bicolor miR395d 12 80
sbi-miR395a MIMAT0001430 Sorghum bicolor miR395a 12 80
sbi-miR395b MIMAT0001429 Sorghum bicolor miR395b 12 80
gga-miR-138-1-3p MIMAT0026505 Gallus gallus miR-138-1-3p 12 80
osa-miR395u MIMAT0000975 Oryza sativa miR395u 12 80
osa-miR395a MIMAT0000973 Oryza sativa miR395a 12 80
osa-miR395c MIMAT0000972 Oryza sativa miR395c 12 80
osa-miR395t MIMAT0000969 Oryza sativa miR395t 12 80
osa-miR395s MIMAT0000968 Oryza sativa miR395s 12 80
osa-miR395l MIMAT0000967 Oryza sativa miR395l 12 80
osa-miR395k MIMAT0000966 Oryza sativa miR395k 12 80
osa-miR395j MIMAT0000965 Oryza sativa miR395j 12 80
osa-miR395i MIMAT0000964 Oryza sativa miR395i 12 80
osa-miR395h MIMAT0000963 Oryza sativa miR395h 12 80
osa-miR395g MIMAT0000962 Oryza sativa miR395g 12 80
osa-miR395e MIMAT0000961 Oryza sativa miR395e 12 80
osa-miR395d MIMAT0000960 Oryza sativa miR395d 12 80
osa-miR395b MIMAT0000959 Oryza sativa miR395b 12 80
cbr-miR-86 MIMAT0000491 Caenorhabditis briggsae miR-86 12 80
cel-miR-86-5p MIMAT0000059 Caenorhabditis elegans miR-86-5p 12 80
>prd-miR-1175-5p MIMAT0030502 Panagrellus redivivus miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcact 7
|||||||
Sbjct: 8 cttcact 2
>hsa-miR-6837-3p MIMAT0027577 Homo sapiens miR-6837-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcact 7
|||||||
Sbjct: 2 cttcact 8
>ppe-miR6285 MIMAT0027316 Prunus persica miR6285
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcact 7
|||||||
Sbjct: 8 cttcact 2
>ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcact 7
|||||||
Sbjct: 2 cttcact 8
>tca-miR-3858-5p MIMAT0018782 Tribolium castaneum miR-3858-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcact 7
|||||||
Sbjct: 7 cttcact 1
>gga-miR-1550-3p MIMAT0007404 Gallus gallus miR-1550-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcact 7
|||||||
Sbjct: 1 cttcact 7
>eca-miR-9073 MIMAT0034618 Equus caballus miR-9073
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>gra-miR8633 MIMAT0033979 Gossypium raimondii miR8633
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>str-miR-37a-5p MIMAT0033454 Strongyloides ratti miR-37a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 6 ttcact 1
>str-miR-1175-5p MIMAT0033376 Strongyloides ratti miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 8 cttcac 3
>str-miR-252b-3p MIMAT0033371 Strongyloides ratti miR-252b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 3 cttcac 8
>str-miR-86-5p MIMAT0033354 Strongyloides ratti miR-86-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>ssa-miR-183-2-3p MIMAT0032431 Salmo salar miR-183-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 6 ttcact 1
>bma-miR-86 MIMAT0031762 Brugia malayi miR-86
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>prd-miR-86-5p MIMAT0030466 Panagrellus redivivus miR-86-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>cbn-miR-785 MIMAT0029751 Caenorhabditis brenneri miR-785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>cbn-miR-86 MIMAT0029750 Caenorhabditis brenneri miR-86
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>cbr-miR-785b MIMAT0029609 Caenorhabditis briggsae miR-785b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>mdo-miR-7361-3p MIMAT0028735 Monodelphis domestica miR-7361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>mdo-miR-7355-3p MIMAT0028723 Monodelphis domestica miR-7355-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 1 cttcac 6
>ccr-miR-726 MIMAT0026313 Cyprinus carpio miR-726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>gga-miR-6635-5p MIMAT0025731 Gallus gallus miR-6635-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>ptc-miR6472 MIMAT0025211 Populus trichocarpa miR6472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 7 ttcact 2
>hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>cgr-miR-653 MIMAT0023993 Cricetulus griseus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>hco-miR-86 MIMAT0023350 Haemonchus contortus miR-86
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>aca-miR-726 MIMAT0021986 Anolis carolinensis miR-726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>asu-miR-86-5p MIMAT0021479 Ascaris suum miR-86-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>mtr-miR160f MIMAT0021268 Medicago truncatula miR160f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 8 cttcac 3
>pma-miR-4545-5p MIMAT0019575 Petromyzon marinus miR-4545-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 1 cttcac 6
>oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 1 cttcac 6
>tae-miR395a MIMAT0018222 Triticum aestivum miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>hsa-miR-3611 MIMAT0017988 Homo sapiens miR-3611
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 8 cttcac 3
>hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>cin-miR-4078-3p MIMAT0016646 Ciona intestinalis miR-4078-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>cin-miR-4060-5p MIMAT0016608 Ciona intestinalis miR-4060-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 3 ttcact 8
>sja-miR-31-3p MIMAT0016256 Schistosoma japonicum miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 3 cttcac 8
>ppy-miR-1257 MIMAT0016183 Pongo pygmaeus miR-1257
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 6 ttcact 1
>bmo-miR-3212 MIMAT0015391 Bombyx mori miR-3212
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>bmo-miR-3207 MIMAT0015385 Bombyx mori miR-3207
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 8 cttcac 3
>osa-miR395y MIMAT0014125 Oryza sativa miR395y
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395x MIMAT0014124 Oryza sativa miR395x
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395p-3p MIMAT0014013 Zea mays miR395p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395o-3p MIMAT0014012 Zea mays miR395o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395n-3p MIMAT0014011 Zea mays miR395n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395m-3p MIMAT0014010 Zea mays miR395m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395l-3p MIMAT0014009 Zea mays miR395l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395k-3p MIMAT0014008 Zea mays miR395k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395j-3p MIMAT0014007 Zea mays miR395j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395i-3p MIMAT0014006 Zea mays miR395i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395h-3p MIMAT0014005 Zea mays miR395h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395g-3p MIMAT0014004 Zea mays miR395g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395f-3p MIMAT0014003 Zea mays miR395f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395e-3p MIMAT0014002 Zea mays miR395e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395d-3p MIMAT0014001 Zea mays miR395d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>rno-miR-653-3p MIMAT0017361 Rattus norvegicus miR-653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>ppc-miR-86 MIMAT0011662 Pristionchus pacificus miR-86
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>crm-miR-785 MIMAT0011602 Caenorhabditis remanei miR-785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>crm-miR-86-5p MIMAT0011585 Caenorhabditis remanei miR-86-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>sbi-miR395l MIMAT0011356 Sorghum bicolor miR395l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395k MIMAT0011355 Sorghum bicolor miR395k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395j MIMAT0011354 Sorghum bicolor miR395j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395i MIMAT0011353 Sorghum bicolor miR395i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395h MIMAT0011352 Sorghum bicolor miR395h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395g MIMAT0011351 Sorghum bicolor miR395g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395c MIMAT0011350 Sorghum bicolor miR395c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>dre-miR-2192 MIMAT0011312 Danio rerio miR-2192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>sme-miR-2170 MIMAT0011269 Schmidtea mediterranea miR-2170
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>sly-miR1916 MIMAT0007908 Solanum lycopersicum miR1916
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 3 ttcact 8
>bmo-miR-317-3p MIMAT0007906 Bombyx mori miR-317-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 6 ttcact 1
>mml-miR-653-3p MIMAT0026905 Macaca mulatta miR-653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>hsa-miR-1257 MIMAT0005908 Homo sapiens miR-1257
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 6 ttcact 1
>mcmv-miR-m01-3-5p MIMAT0005536 Mouse cytomegalovirus
miR-m01-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 8 cttcac 3
>smo-miR1080 MIMAT0005230 Selaginella moellendorffii miR1080
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>mmu-miR-653-3p MIMAT0017284 Mus musculus miR-653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>cbr-miR-785a MIMAT0004286 Caenorhabditis briggsae miR-785a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>cel-miR-785-3p MIMAT0004220 Caenorhabditis elegans miR-785-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>osa-miR395r MIMAT0003878 Oryza sativa miR395r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395w MIMAT0003877 Oryza sativa miR395w
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395v MIMAT0003876 Oryza sativa miR395v
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395q MIMAT0003874 Oryza sativa miR395q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395p MIMAT0003873 Oryza sativa miR395p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395n MIMAT0003871 Oryza sativa miR395n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395m MIMAT0003870 Oryza sativa miR395m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>dre-miR-726 MIMAT0003754 Danio rerio miR-726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>hsa-miR-653-3p MIMAT0026625 Homo sapiens miR-653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcact 7
||||||
Sbjct: 1 ttcact 6
>rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 1 cttcac 6
>zma-miR395a-3p MIMAT0001701 Zea mays miR395a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395c-3p MIMAT0001700 Zea mays miR395c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>zma-miR395b-3p MIMAT0001698 Zea mays miR395b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395e MIMAT0001433 Sorghum bicolor miR395e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395d MIMAT0001432 Sorghum bicolor miR395d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395a MIMAT0001430 Sorghum bicolor miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>sbi-miR395b MIMAT0001429 Sorghum bicolor miR395b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>gga-miR-138-1-3p MIMAT0026505 Gallus gallus miR-138-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcac 6
||||||
Sbjct: 3 cttcac 8
>osa-miR395u MIMAT0000975 Oryza sativa miR395u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395a MIMAT0000973 Oryza sativa miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395c MIMAT0000972 Oryza sativa miR395c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395t MIMAT0000969 Oryza sativa miR395t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395s MIMAT0000968 Oryza sativa miR395s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395l MIMAT0000967 Oryza sativa miR395l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395k MIMAT0000966 Oryza sativa miR395k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395j MIMAT0000965 Oryza sativa miR395j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395i MIMAT0000964 Oryza sativa miR395i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395h MIMAT0000963 Oryza sativa miR395h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395g MIMAT0000962 Oryza sativa miR395g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395e MIMAT0000961 Oryza sativa miR395e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395d MIMAT0000960 Oryza sativa miR395d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>osa-miR395b MIMAT0000959 Oryza sativa miR395b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcac 6
||||||
Sbjct: 6 cttcac 1
>cbr-miR-86 MIMAT0000491 Caenorhabditis briggsae miR-86
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
>cel-miR-86-5p MIMAT0000059 Caenorhabditis elegans miR-86-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcact 7
||||||
Sbjct: 8 ttcact 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 135
Number of successful extensions: 111
Number of sequences better than 100.0: 111
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 111
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
