BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s22
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR9748 MIMAT0036375 Glycine max miR9748 14 20
ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b 14 20
ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a 14 20
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 14 20
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 14 20
osa-miR5499 MIMAT0022132 Oryza sativa miR5499 14 20
aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418 14 20
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 14 20
bta-miR-2426 MIMAT0011996 Bos taurus miR-2426 14 20
tch-miR-671-5p MIMAT0036579 Tupaia chinensis miR-671-5p 12 80
ggo-miR-516a-3p MIMAT0036442 Gorilla gorilla miR-516a-3p 12 80
chi-miR-671-5p MIMAT0036286 Capra hircus miR-671-5p 12 80
dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p 12 80
gsa-miR-184b-5p MIMAT0035302 Gyrodactylus salaris miR-184b-5p 12 80
efu-miR-9328 MIMAT0035069 Eptesicus fuscus miR-9328 12 80
efu-miR-9315 MIMAT0034991 Eptesicus fuscus miR-9315 12 80
eca-miR-9130 MIMAT0034681 Equus caballus miR-9130 12 80
eca-miR-9082 MIMAT0034627 Equus caballus miR-9082 12 80
cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823 12 80
pxy-miR-8513-5p MIMAT0033744 Plutella xylostella miR-8513-5p 12 80
ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p 12 80
cpa-miR8146 MIMAT0031843 Carica papaya miR8146 12 80
bbe-miR-2068-5p MIMAT0031633 Branchiostoma belcheri miR-2068-5p 12 80
ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p 12 80
prd-miR-7912-3p MIMAT0030651 Panagrellus redivivus miR-7912-3p 12 80
prd-miR-235-5p MIMAT0030602 Panagrellus redivivus miR-235-5p 12 80
prd-miR-7889-3p MIMAT0030551 Panagrellus redivivus miR-7889-3p 12 80
bta-miR-7864 MIMAT0030449 Bos taurus miR-7864 12 80
rgl-miR7810 MIMAT0032256 Rehmannia glutinosa miR7810 12 80
hhi-miR-129b-3p MIMAT0030350 Hippoglossus hippoglossus miR-129b-3p 12 80
bdi-miR7751-5p MIMAT0030242 Brachypodium distachyon miR7751-5p 12 80
mmu-miR-7673-3p MIMAT0029853 Mus musculus miR-7673-3p 12 80
mmu-miR-7657-3p MIMAT0029821 Mus musculus miR-7657-3p 12 80
gga-miR-7437-3p MIMAT0029029 Gallus gallus miR-7437-3p 12 80
mdo-miR-7387-3p MIMAT0028839 Monodelphis domestica miR-7387-3p 12 80
mdo-miR-7354-5p MIMAT0028720 Monodelphis domestica miR-7354-5p 12 80
mdo-miR-7297-3p MIMAT0028579 Monodelphis domestica miR-7297-3p 12 80
mdo-miR-7276-5p MIMAT0028526 Monodelphis domestica miR-7276-5p 12 80
mml-miR-518g-3p MIMAT0028297 Macaca mulatta miR-518g-3p 12 80
hsa-miR-7162-5p MIMAT0028234 Homo sapiens miR-7162-5p 12 80
mmu-miR-6925-5p MIMAT0027750 Mus musculus miR-6925-5p 12 80
hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p 12 80
hsa-miR-6830-5p MIMAT0027560 Homo sapiens miR-6830-5p 12 80
hsa-miR-6828-5p MIMAT0027556 Homo sapiens miR-6828-5p 12 80
blv-miR-B5-5p MIMAT0025865 Bovine leukemia miR-B5-5p 12 80
ssc-miR-671-5p MIMAT0025381 Sus scrofa miR-671-5p 12 80
hvu-miR6186 MIMAT0024810 Hordeum vulgare miR6186 12 80
ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252 12 80
ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252 12 80
cgr-miR-671-5p MIMAT0023996 Cricetulus griseus miR-671-5p 12 80
osa-miR5823 MIMAT0023296 Oryza sativa miR5823 12 80
mtr-miR5557-3p MIMAT0022216 Medicago truncatula miR5557-3p 12 80
aca-miR-5426-3p MIMAT0022047 Anolis carolinensis miR-5426-3p 12 80
mtr-miR5212-3p MIMAT0027100 Medicago truncatula miR5212-3p 12 80
bdi-miR5056 MIMAT0020554 Brachypodium distachyon miR5056 12 80
cel-miR-4920 MIMAT0020126 Caenorhabditis elegans miR-4920 12 80
oar-miR-1197-5p MIMAT0019257 Ovis aries miR-1197-5p 12 80
hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914 12 80
tca-miR-2944b-5p MIMAT0018746 Tribolium castaneum miR-2944b-5p 12 80
tca-miR-3818-5p MIMAT0018660 Tribolium castaneum miR-3818-5p 12 80
hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p 12 80
cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p 12 80
ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252 12 80
ppy-miR-671-5p MIMAT0016096 Pongo pygmaeus miR-671-5p 12 80
ppy-miR-516a-3p MIMAT0015946 Pongo pygmaeus miR-516a-3p 12 80
bmo-miR-3283 MIMAT0015469 Bombyx mori miR-3283 12 80
api-miR-3051 MIMAT0014792 Acyrthosiphon pisum miR-3051 12 80
tgu-miR-2961 MIMAT0014461 Taeniopygia guttata miR-2961 12 80
zma-miR395m-5p MIMAT0015345 Zea mays miR395m-5p 12 80
zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p 12 80
eca-miR-671-5p MIMAT0012948 Equus caballus miR-671-5p 12 80
mtr-miR2640 MIMAT0013407 Medicago truncatula miR2640 12 80
dps-miR-276c MIMAT0012293 Drosophila pseudoobscura miR-276c 12 80
dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p 12 80
dme-miR-2500-5p MIMAT0012214 Drosophila melanogaster miR-2500-5p 12 80
bfl-miR-2068-5p MIMAT0009996 Branchiostoma floridae miR-2068-5p 12 80
bta-miR-671 MIMAT0009365 Bos taurus miR-671 12 80
ptr-miR-516a MIMAT0008182 Pan troglodytes miR-516a 12 80
mml-miR-671-5p MIMAT0006505 Macaca mulatta miR-671-5p 12 80
odi-miR-1503 MIMAT0006063 Oikopleura dioica miR-1503 12 80
mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p 12 80
oan-miR-1375-5p MIMAT0007064 Ornithorhynchus anatinus miR-1375-5p 12 80
oan-miR-1334 MIMAT0006827 Ornithorhynchus anatinus miR-1334 12 80
hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p 12 80
hsa-miR-1238-3p MIMAT0005593 Homo sapiens miR-1238-3p 12 80
ppt-miR1052 MIMAT0005169 Physcomitrella patens miR1052 12 80
mdv2-miR-M14-3p MIMAT0004452 Mareks disease miR-M14-3p 12 80
dme-miR-994-5p MIMAT0005513 Drosophila melanogaster miR-994-5p 12 80
ath-miR866-5p MIMAT0004315 Arabidopsis thaliana miR866-5p 12 80
ppt-miR1219c MIMAT0003910 Physcomitrella patens miR1219c 12 80
ppt-miR1219b MIMAT0003909 Physcomitrella patens miR1219b 12 80
ppt-miR1219a MIMAT0003908 Physcomitrella patens miR1219a 12 80
mmu-miR-671-5p MIMAT0003731 Mus musculus miR-671-5p 12 80
hsa-miR-671-5p MIMAT0003880 Homo sapiens miR-671-5p 12 80
hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p 12 80
hsa-miR-516b-3p MIMAT0002860 Homo sapiens miR-516b-3p 12 80
mghv-miR-M1-1-5p MIMAT0017185 Mouse gammaherpesvirus miR-M1-1-5p 12 80
>gma-miR9748 MIMAT0036375 Glycine max miR9748
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 8 cttcctt 2
>ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>osa-miR5499 MIMAT0022132 Oryza sativa miR5499
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 8 cttcctt 2
>aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcctt 7
|||||||
Sbjct: 1 cttcctt 7
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcctt 7
|||||||
Sbjct: 2 cttcctt 8
>bta-miR-2426 MIMAT0011996 Bos taurus miR-2426
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>tch-miR-671-5p MIMAT0036579 Tupaia chinensis miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>ggo-miR-516a-3p MIMAT0036442 Gorilla gorilla miR-516a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>chi-miR-671-5p MIMAT0036286 Capra hircus miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 7 ttcctt 2
>gsa-miR-184b-5p MIMAT0035302 Gyrodactylus salaris miR-184b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 2 ttcctt 7
>efu-miR-9328 MIMAT0035069 Eptesicus fuscus miR-9328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>efu-miR-9315 MIMAT0034991 Eptesicus fuscus miR-9315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 6 ttcctt 1
>eca-miR-9130 MIMAT0034681 Equus caballus miR-9130
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>eca-miR-9082 MIMAT0034627 Equus caballus miR-9082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>pxy-miR-8513-5p MIMAT0033744 Plutella xylostella miR-8513-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 7 ttcctt 2
>ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>cpa-miR8146 MIMAT0031843 Carica papaya miR8146
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>bbe-miR-2068-5p MIMAT0031633 Branchiostoma belcheri miR-2068-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>prd-miR-7912-3p MIMAT0030651 Panagrellus redivivus miR-7912-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>prd-miR-235-5p MIMAT0030602 Panagrellus redivivus miR-235-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>prd-miR-7889-3p MIMAT0030551 Panagrellus redivivus miR-7889-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>bta-miR-7864 MIMAT0030449 Bos taurus miR-7864
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>rgl-miR7810 MIMAT0032256 Rehmannia glutinosa miR7810
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>hhi-miR-129b-3p MIMAT0030350 Hippoglossus hippoglossus
miR-129b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>bdi-miR7751-5p MIMAT0030242 Brachypodium distachyon miR7751-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>mmu-miR-7673-3p MIMAT0029853 Mus musculus miR-7673-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>mmu-miR-7657-3p MIMAT0029821 Mus musculus miR-7657-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>gga-miR-7437-3p MIMAT0029029 Gallus gallus miR-7437-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>mdo-miR-7387-3p MIMAT0028839 Monodelphis domestica miR-7387-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 6 ttcctt 1
>mdo-miR-7354-5p MIMAT0028720 Monodelphis domestica miR-7354-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>mdo-miR-7297-3p MIMAT0028579 Monodelphis domestica miR-7297-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>mdo-miR-7276-5p MIMAT0028526 Monodelphis domestica miR-7276-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>mml-miR-518g-3p MIMAT0028297 Macaca mulatta miR-518g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>hsa-miR-7162-5p MIMAT0028234 Homo sapiens miR-7162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>mmu-miR-6925-5p MIMAT0027750 Mus musculus miR-6925-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>hsa-miR-6830-5p MIMAT0027560 Homo sapiens miR-6830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>hsa-miR-6828-5p MIMAT0027556 Homo sapiens miR-6828-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>blv-miR-B5-5p MIMAT0025865 Bovine leukemia miR-B5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>ssc-miR-671-5p MIMAT0025381 Sus scrofa miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>hvu-miR6186 MIMAT0024810 Hordeum vulgare miR6186
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>cgr-miR-671-5p MIMAT0023996 Cricetulus griseus miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>osa-miR5823 MIMAT0023296 Oryza sativa miR5823
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 6 ttcctt 1
>mtr-miR5557-3p MIMAT0022216 Medicago truncatula miR5557-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>aca-miR-5426-3p MIMAT0022047 Anolis carolinensis miR-5426-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>mtr-miR5212-3p MIMAT0027100 Medicago truncatula miR5212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>bdi-miR5056 MIMAT0020554 Brachypodium distachyon miR5056
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>cel-miR-4920 MIMAT0020126 Caenorhabditis elegans miR-4920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>oar-miR-1197-5p MIMAT0019257 Ovis aries miR-1197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 6 ttcctt 1
>tca-miR-2944b-5p MIMAT0018746 Tribolium castaneum miR-2944b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 7 ttcctt 2
>tca-miR-3818-5p MIMAT0018660 Tribolium castaneum miR-3818-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 2 ttcctt 7
>ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>ppy-miR-671-5p MIMAT0016096 Pongo pygmaeus miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>ppy-miR-516a-3p MIMAT0015946 Pongo pygmaeus miR-516a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>bmo-miR-3283 MIMAT0015469 Bombyx mori miR-3283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>api-miR-3051 MIMAT0014792 Acyrthosiphon pisum miR-3051
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 6 ttcctt 1
>tgu-miR-2961 MIMAT0014461 Taeniopygia guttata miR-2961
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>zma-miR395m-5p MIMAT0015345 Zea mays miR395m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 2 ttcctt 7
>zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 3 ttcctt 8
>eca-miR-671-5p MIMAT0012948 Equus caballus miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>mtr-miR2640 MIMAT0013407 Medicago truncatula miR2640
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>dps-miR-276c MIMAT0012293 Drosophila pseudoobscura miR-276c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 6 ttcctt 1
>dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 7 ttcctt 2
>dme-miR-2500-5p MIMAT0012214 Drosophila melanogaster
miR-2500-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>bfl-miR-2068-5p MIMAT0009996 Branchiostoma floridae miR-2068-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>bta-miR-671 MIMAT0009365 Bos taurus miR-671
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>ptr-miR-516a MIMAT0008182 Pan troglodytes miR-516a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>mml-miR-671-5p MIMAT0006505 Macaca mulatta miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>odi-miR-1503 MIMAT0006063 Oikopleura dioica miR-1503
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 3 ttcctt 8
>oan-miR-1375-5p MIMAT0007064 Ornithorhynchus anatinus
miR-1375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>oan-miR-1334 MIMAT0006827 Ornithorhynchus anatinus miR-1334
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>hsa-miR-1238-3p MIMAT0005593 Homo sapiens miR-1238-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>ppt-miR1052 MIMAT0005169 Physcomitrella patens miR1052
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 1 ttcctt 6
>mdv2-miR-M14-3p MIMAT0004452 Mareks disease miR-M14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>dme-miR-994-5p MIMAT0005513 Drosophila melanogaster miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>ath-miR866-5p MIMAT0004315 Arabidopsis thaliana miR866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcctt 7
||||||
Sbjct: 8 ttcctt 3
>ppt-miR1219c MIMAT0003910 Physcomitrella patens miR1219c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>ppt-miR1219b MIMAT0003909 Physcomitrella patens miR1219b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>ppt-miR1219a MIMAT0003908 Physcomitrella patens miR1219a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 1 cttcct 6
>mmu-miR-671-5p MIMAT0003731 Mus musculus miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>hsa-miR-671-5p MIMAT0003880 Homo sapiens miR-671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>hsa-miR-516b-3p MIMAT0002860 Homo sapiens miR-516b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttcct 6
||||||
Sbjct: 3 cttcct 8
>mghv-miR-M1-1-5p MIMAT0017185 Mouse gammaherpesvirus
miR-M1-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 139
Number of extensions: 130
Number of successful extensions: 97
Number of sequences better than 100.0: 97
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 97
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
