BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR164
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gma-miR9748 MIMAT0036375 Glycine max miR9748                           16   6.9  
osa-miR5499 MIMAT0022132 Oryza sativa miR5499                          16   6.9  
cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823                    14      27
ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p        14      27
ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p                  14      27
ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b                  14      27
ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a                  14      27
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p         14      27
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p                  14      27
hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p                  14      27
ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252                     14      27
ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252                     14      27
aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418                 14      27
tca-miR-2944c-5p MIMAT0018810 Tribolium castaneum miR-2944c-5p         14      27
ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252                      14      27
aae-miR-2944b-5p MIMAT0014304 Aedes aegypti miR-2944b-5p               14      27
aae-miR-2944a-5p MIMAT0014302 Aedes aegypti miR-2944a-5p               14      27
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p                          14      27
zma-miR395l-5p MIMAT0015344 Zea mays miR395l-5p                        14      27
bta-miR-2426 MIMAT0011996 Bos taurus miR-2426                          14      27
gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612                       14      27
hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p                  14      27
>gma-miR9748 MIMAT0036375 Glycine max miR9748
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 cttccttc 8
         ||||||||
Sbjct: 8 cttccttc 1
>osa-miR5499 MIMAT0022132 Oryza sativa miR5499
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 cttccttc 8
         ||||||||
Sbjct: 8 cttccttc 1
>cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 1 ttccttc 7
>ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 1 ttccttc 7
>ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 8 ttccttc 2
>ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 7 cttcctt 1
>ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 7 cttcctt 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 7 cttcctt 1
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 7 cttcctt 1
>hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 1 ttccttc 7
>ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 8 ttccttc 2
>ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 8 ttccttc 2
>aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 1 cttcctt 7
>tca-miR-2944c-5p MIMAT0018810 Tribolium castaneum miR-2944c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 7 ttccttc 1
>ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 8 ttccttc 2
>aae-miR-2944b-5p MIMAT0014304 Aedes aegypti miR-2944b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 7 ttccttc 1
>aae-miR-2944a-5p MIMAT0014302 Aedes aegypti miR-2944a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 7 ttccttc 1
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 2 cttcctt 8
>zma-miR395l-5p MIMAT0015344 Zea mays miR395l-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 2 ttccttc 8
>bta-miR-2426 MIMAT0011996 Bos taurus miR-2426
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cttcctt 7
         |||||||
Sbjct: 7 cttcctt 1
>gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 7 ttccttc 1
>hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccttc 8
         |||||||
Sbjct: 8 ttccttc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 224
Number of extensions: 200
Number of successful extensions: 159
Number of sequences better than 100.0: 22
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)