BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR164
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR9748 MIMAT0036375 Glycine max miR9748 16 6.9
osa-miR5499 MIMAT0022132 Oryza sativa miR5499 16 6.9
cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823 14 27
ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p 14 27
ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p 14 27
ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b 14 27
ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a 14 27
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 14 27
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 14 27
hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p 14 27
ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252 14 27
ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252 14 27
aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418 14 27
tca-miR-2944c-5p MIMAT0018810 Tribolium castaneum miR-2944c-5p 14 27
ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252 14 27
aae-miR-2944b-5p MIMAT0014304 Aedes aegypti miR-2944b-5p 14 27
aae-miR-2944a-5p MIMAT0014302 Aedes aegypti miR-2944a-5p 14 27
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 14 27
zma-miR395l-5p MIMAT0015344 Zea mays miR395l-5p 14 27
bta-miR-2426 MIMAT0011996 Bos taurus miR-2426 14 27
gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612 14 27
hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p 14 27
>gma-miR9748 MIMAT0036375 Glycine max miR9748
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 cttccttc 8
||||||||
Sbjct: 8 cttccttc 1
>osa-miR5499 MIMAT0022132 Oryza sativa miR5499
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 cttccttc 8
||||||||
Sbjct: 8 cttccttc 1
>cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttccttc 8
|||||||
Sbjct: 1 ttccttc 7
>ppc-miR-8297-3p MIMAT0033112 Pristionchus pacificus miR-8297-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttccttc 8
|||||||
Sbjct: 1 ttccttc 7
>ppe-miR8122-3p MIMAT0031524 Prunus persica miR8122-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 8 ttccttc 2
>ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>hsa-miR-6868-3p MIMAT0027637 Homo sapiens miR-6868-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttccttc 8
|||||||
Sbjct: 1 ttccttc 7
>ggo-miR-1252 MIMAT0024251 Gorilla gorilla miR-1252
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 8 ttccttc 2
>ptr-miR-1252 MIMAT0024039 Pan troglodytes miR-1252
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 8 ttccttc 2
>aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcctt 7
|||||||
Sbjct: 1 cttcctt 7
>tca-miR-2944c-5p MIMAT0018810 Tribolium castaneum miR-2944c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 7 ttccttc 1
>ppy-miR-1252 MIMAT0016177 Pongo pygmaeus miR-1252
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 8 ttccttc 2
>aae-miR-2944b-5p MIMAT0014304 Aedes aegypti miR-2944b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 7 ttccttc 1
>aae-miR-2944a-5p MIMAT0014302 Aedes aegypti miR-2944a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 7 ttccttc 1
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcctt 7
|||||||
Sbjct: 2 cttcctt 8
>zma-miR395l-5p MIMAT0015344 Zea mays miR395l-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttccttc 8
|||||||
Sbjct: 2 ttccttc 8
>bta-miR-2426 MIMAT0011996 Bos taurus miR-2426
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttcctt 7
|||||||
Sbjct: 7 cttcctt 1
>gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 7 ttccttc 1
>hsa-miR-1252-5p MIMAT0005944 Homo sapiens miR-1252-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttccttc 8
|||||||
Sbjct: 8 ttccttc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 224
Number of extensions: 200
Number of successful extensions: 159
Number of sequences better than 100.0: 22
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)