BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s81
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p 14 20
cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705 14 20
hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p 14 20
tch-miR-1301 MIMAT0036598 Tupaia chinensis miR-1301 12 80
ptr-miR-1283b MIMAT0036458 Pan troglodytes miR-1283b 12 80
ptr-miR-518g-5p MIMAT0036454 Pan troglodytes miR-518g-5p 12 80
ggo-miR-1283 MIMAT0036431 Gorilla gorilla miR-1283 12 80
chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p 12 80
tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p 12 80
dvi-miR-932-3p MIMAT0035574 Drosophila virilis miR-932-3p 12 80
efu-miR-9246b MIMAT0034862 Eptesicus fuscus miR-9246b 12 80
efu-miR-9198e MIMAT0034783 Eptesicus fuscus miR-9198e 12 80
eca-miR-9079 MIMAT0034624 Equus caballus miR-9079 12 80
cfa-miR-8845 MIMAT0034339 Canis familiaris miR-8845 12 80
cfa-miR-1301 MIMAT0034337 Canis familiaris miR-1301 12 80
lva-miR-4854-3p MIMAT0032237 Lytechinus variegatus miR-4854-3p 12 80
cbr-miR-7583c-5p MIMAT0029593 Caenorhabditis briggsae miR-7583c-5p 12 80
ipu-miR-7572 MIMAT0029571 Ictalurus punctatus miR-7572 12 80
mdo-miR-7258-3p MIMAT0028483 Monodelphis domestica miR-7258-3p 12 80
bma-miR-5875 MIMAT0026374 Brugia malayi miR-5875 12 80
hsa-miR-6841-3p MIMAT0027585 Homo sapiens miR-6841-3p 12 80
gga-miR-6669-3p MIMAT0025771 Gallus gallus miR-6669-3p 12 80
ggo-miR-1301 MIMAT0024158 Gorilla gorilla miR-1301 12 80
cgr-miR-450b-5p MIMAT0023962 Cricetulus griseus miR-450b-5p 12 80
cgr-miR-300 MIMAT0023889 Cricetulus griseus miR-300 12 80
hco-miR-5921-5p MIMAT0023395 Haemonchus contortus miR-5921-5p 12 80
hco-miR-5909 MIMAT0023365 Haemonchus contortus miR-5909 12 80
osa-miR5791 MIMAT0023258 Oryza sativa miR5791 12 80
ola-miR-187 MIMAT0022596 Oryzias latipes miR-187 12 80
mtr-miR5246 MIMAT0021242 Medicago truncatula miR5246 12 80
hsa-miR-5047 MIMAT0020541 Homo sapiens miR-5047 12 80
spu-miR-4854 MIMAT0020077 Strongylocentrotus purpuratus miR-4854 12 80
hsa-miR-4696 MIMAT0019790 Homo sapiens miR-4696 12 80
tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p 12 80
tca-miR-3856-5p MIMAT0018770 Tribolium castaneum miR-3856-5p 12 80
pab-miR3698 MIMAT0018130 Picea abies miR3698 12 80
vvi-miR3630-5p MIMAT0018027 Vitis vinifera miR3630-5p 12 80
hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327 12 80
cin-miR-4173-3p MIMAT0016782 Ciona intestinalis miR-4173-3p 12 80
ppy-miR-1301 MIMAT0016221 Pongo pygmaeus miR-1301 12 80
ppy-miR-1283b MIMAT0016205 Pongo pygmaeus miR-1283b 12 80
ppy-miR-527 MIMAT0015986 Pongo pygmaeus miR-527 12 80
ppy-miR-518a-5p MIMAT0015951 Pongo pygmaeus miR-518a-5p 12 80
aly-miR838-5p MIMAT0017621 Arabidopsis lyrata miR838-5p 12 80
aly-miR835-5p MIMAT0017619 Arabidopsis lyrata miR835-5p 12 80
cqu-miR-932-3p MIMAT0014415 Culex quinquefasciatus miR-932-3p 12 80
aae-miR-932-3p MIMAT0014270 Aedes aegypti miR-932-3p 12 80
eca-miR-1301 MIMAT0013070 Equus caballus miR-1301 12 80
dsi-miR-932-3p MIMAT0012478 Drosophila simulans miR-932-3p 12 80
dps-miR-2553-3p MIMAT0012367 Drosophila pseudoobscura miR-2553-3p 12 80
dps-miR-932-3p MIMAT0012260 Drosophila pseudoobscura miR-932-3p 12 80
ppt-miR2083-5p MIMAT0010022 Physcomitrella patens miR2083-5p 12 80
bta-miR-1301 MIMAT0009958 Bos taurus miR-1301 12 80
tca-miR-932-3p MIMAT0019132 Tribolium castaneum miR-932-3p 12 80
ptr-miR-527 MIMAT0008212 Pan troglodytes miR-527 12 80
gga-miR-1811 MIMAT0007729 Gallus gallus miR-1811 12 80
dme-miR-932-3p MIMAT0020860 Drosophila melanogaster miR-932-3p 12 80
ath-miR835-5p MIMAT0004255 Arabidopsis thaliana miR835-5p 12 80
mmu-miR-450b-5p MIMAT0003511 Mus musculus miR-450b-5p 12 80
hsa-miR-1301-3p MIMAT0005797 Homo sapiens miR-1301-3p 12 80
hsa-miR-527 MIMAT0002862 Homo sapiens miR-527 12 80
hsa-miR-518a-5p MIMAT0005457 Homo sapiens miR-518a-5p 12 80
dre-miR-196a-3p MIMAT0031983 Danio rerio miR-196a-3p 12 80
rno-miR-300-3p MIMAT0000902 Rattus norvegicus miR-300-3p 12 80
mmu-miR-300-3p MIMAT0000378 Mus musculus miR-300-3p 12 80
hsa-miR-106a-3p MIMAT0004517 Homo sapiens miR-106a-3p 12 80
>ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgcag 7
|||||||
Sbjct: 2 cttgcag 8
>cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcag 7
|||||||
Sbjct: 8 cttgcag 2
>hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcag 7
|||||||
Sbjct: 8 cttgcag 2
>tch-miR-1301 MIMAT0036598 Tupaia chinensis miR-1301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>ptr-miR-1283b MIMAT0036458 Pan troglodytes miR-1283b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>ptr-miR-518g-5p MIMAT0036454 Pan troglodytes miR-518g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>ggo-miR-1283 MIMAT0036431 Gorilla gorilla miR-1283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 8 ttgcag 3
>tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>dvi-miR-932-3p MIMAT0035574 Drosophila virilis miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>efu-miR-9246b MIMAT0034862 Eptesicus fuscus miR-9246b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>efu-miR-9198e MIMAT0034783 Eptesicus fuscus miR-9198e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 3 cttgca 8
>eca-miR-9079 MIMAT0034624 Equus caballus miR-9079
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>cfa-miR-8845 MIMAT0034339 Canis familiaris miR-8845
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>cfa-miR-1301 MIMAT0034337 Canis familiaris miR-1301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>lva-miR-4854-3p MIMAT0032237 Lytechinus variegatus miR-4854-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>cbr-miR-7583c-5p MIMAT0029593 Caenorhabditis briggsae
miR-7583c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 8 ttgcag 3
>ipu-miR-7572 MIMAT0029571 Ictalurus punctatus miR-7572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>mdo-miR-7258-3p MIMAT0028483 Monodelphis domestica miR-7258-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>bma-miR-5875 MIMAT0026374 Brugia malayi miR-5875
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 8 cttgca 3
>hsa-miR-6841-3p MIMAT0027585 Homo sapiens miR-6841-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 3 cttgca 8
>gga-miR-6669-3p MIMAT0025771 Gallus gallus miR-6669-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>ggo-miR-1301 MIMAT0024158 Gorilla gorilla miR-1301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>cgr-miR-450b-5p MIMAT0023962 Cricetulus griseus miR-450b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>cgr-miR-300 MIMAT0023889 Cricetulus griseus miR-300
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 8 cttgca 3
>hco-miR-5921-5p MIMAT0023395 Haemonchus contortus miR-5921-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>hco-miR-5909 MIMAT0023365 Haemonchus contortus miR-5909
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 7 ttgcag 2
>osa-miR5791 MIMAT0023258 Oryza sativa miR5791
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>ola-miR-187 MIMAT0022596 Oryzias latipes miR-187
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 8 ttgcag 3
>mtr-miR5246 MIMAT0021242 Medicago truncatula miR5246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>hsa-miR-5047 MIMAT0020541 Homo sapiens miR-5047
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>spu-miR-4854 MIMAT0020077 Strongylocentrotus purpuratus
miR-4854
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>hsa-miR-4696 MIMAT0019790 Homo sapiens miR-4696
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 8 ttgcag 3
>tca-miR-3856-5p MIMAT0018770 Tribolium castaneum miR-3856-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>pab-miR3698 MIMAT0018130 Picea abies miR3698
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 1 cttgca 6
>vvi-miR3630-5p MIMAT0018027 Vitis vinifera miR3630-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 3 cttgca 8
>cin-miR-4173-3p MIMAT0016782 Ciona intestinalis miR-4173-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>ppy-miR-1301 MIMAT0016221 Pongo pygmaeus miR-1301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>ppy-miR-1283b MIMAT0016205 Pongo pygmaeus miR-1283b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 7 ttgcag 2
>ppy-miR-527 MIMAT0015986 Pongo pygmaeus miR-527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>ppy-miR-518a-5p MIMAT0015951 Pongo pygmaeus miR-518a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>aly-miR838-5p MIMAT0017621 Arabidopsis lyrata miR838-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>aly-miR835-5p MIMAT0017619 Arabidopsis lyrata miR835-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 3 cttgca 8
>cqu-miR-932-3p MIMAT0014415 Culex quinquefasciatus miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>aae-miR-932-3p MIMAT0014270 Aedes aegypti miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>eca-miR-1301 MIMAT0013070 Equus caballus miR-1301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>dsi-miR-932-3p MIMAT0012478 Drosophila simulans miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>dps-miR-2553-3p MIMAT0012367 Drosophila pseudoobscura
miR-2553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>dps-miR-932-3p MIMAT0012260 Drosophila pseudoobscura miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>ppt-miR2083-5p MIMAT0010022 Physcomitrella patens miR2083-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 3 cttgca 8
>bta-miR-1301 MIMAT0009958 Bos taurus miR-1301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>tca-miR-932-3p MIMAT0019132 Tribolium castaneum miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>ptr-miR-527 MIMAT0008212 Pan troglodytes miR-527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>gga-miR-1811 MIMAT0007729 Gallus gallus miR-1811
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>dme-miR-932-3p MIMAT0020860 Drosophila melanogaster miR-932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 6 cttgca 1
>ath-miR835-5p MIMAT0004255 Arabidopsis thaliana miR835-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgca 6
||||||
Sbjct: 3 cttgca 8
>mmu-miR-450b-5p MIMAT0003511 Mus musculus miR-450b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 3 ttgcag 8
>hsa-miR-1301-3p MIMAT0005797 Homo sapiens miR-1301-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgcag 7
||||||
Sbjct: 1 ttgcag 6
>hsa-miR-527 MIMAT0002862 Homo sapiens miR-527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>hsa-miR-518a-5p MIMAT0005457 Homo sapiens miR-518a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>dre-miR-196a-3p MIMAT0031983 Danio rerio miR-196a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
>rno-miR-300-3p MIMAT0000902 Rattus norvegicus miR-300-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 8 cttgca 3
>mmu-miR-300-3p MIMAT0000378 Mus musculus miR-300-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgca 6
||||||
Sbjct: 8 cttgca 3
>hsa-miR-106a-3p MIMAT0004517 Homo sapiens miR-106a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgcag 7
||||||
Sbjct: 6 ttgcag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 97
Number of extensions: 94
Number of successful extensions: 66
Number of sequences better than 100.0: 66
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 66
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
