BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-470
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pma-miR-1788b-3p MIMAT0019563 Petromyzon marinus miR-1788b-3p 16 6.9
hsv1-miR-H4-3p MIMAT0008402 Herpes Simplex miR-H4-3p 16 6.9
str-miR-72-5p MIMAT0033346 Strongyloides ratti miR-72-5p 14 27
ppc-miR-8216-3p MIMAT0032863 Pristionchus pacificus miR-8216-3p 14 27
cel-miR-8188-5p MIMAT0032789 Caenorhabditis elegans miR-8188-5p 14 27
cel-miR-8187-3p MIMAT0032788 Caenorhabditis elegans miR-8187-3p 14 27
prd-miR-72-5p MIMAT0030478 Panagrellus redivivus miR-72-5p 14 27
lva-miR-31-5p MIMAT0032197 Lytechinus variegatus miR-31-5p 14 27
pmi-miR-31-5p MIMAT0032147 Patiria miniata miR-31-5p 14 27
mmu-miR-216c-3p MIMAT0029889 Mus musculus miR-216c-3p 14 27
cbn-miR-72b MIMAT0029717 Caenorhabditis brenneri miR-72b 14 27
mmu-miR-6908-5p MIMAT0027716 Mus musculus miR-6908-5p 14 27
hsa-miR-6894-3p MIMAT0027689 Homo sapiens miR-6894-3p 14 27
ssc-miR-31 MIMAT0025360 Sus scrofa miR-31 14 27
ptr-miR-4742 MIMAT0024043 Pan troglodytes miR-4742 14 27
cgr-miR-31-5p MIMAT0023902 Cricetulus griseus miR-31-5p 14 27
sly-miR482b MIMAT0023602 Solanum lycopersicum miR482b 14 27
stu-miR482d-3p MIMAT0023600 Solanum tuberosum miR482d-3p 14 27
hco-miR-72 MIMAT0023498 Haemonchus contortus miR-72 14 27
osa-miR5806 MIMAT0023277 Oryza sativa miR5806 14 27
aca-miR-5442 MIMAT0022064 Anolis carolinensis miR-5442 14 27
aca-miR-31-5p MIMAT0021930 Anolis carolinensis miR-31-5p 14 27
asu-miR-72-5p MIMAT0021468 Ascaris suum miR-72-5p 14 27
hsa-miR-4742-5p MIMAT0019872 Homo sapiens miR-4742-5p 14 27
tca-miR-3865-5p MIMAT0018814 Tribolium castaneum miR-3865-5p 14 27
tgu-miR-31 MIMAT0014615 Taeniopygia guttata miR-31 14 27
ghr-miR482b MIMAT0014340 Gossypium hirsutum miR482b 14 27
bma-miR-72 MIMAT0014107 Brugia malayi miR-72 14 27
eca-miR-31 MIMAT0013115 Equus caballus miR-31 14 27
dpu-miR-31 MIMAT0012659 Daphnia pulex miR-31 14 27
ppc-miR-72 MIMAT0011661 Pristionchus pacificus miR-72 14 27
crm-miR-72-5p MIMAT0011567 Caenorhabditis remanei miR-72-5p 14 27
spu-miR-31 MIMAT0009657 Strongylocentrotus purpuratus miR-31 14 27
sko-miR-31 MIMAT0009614 Saccoglossus kowalevskii miR-31 14 27
lgi-miR-31 MIMAT0009566 Lottia gigantea miR-31 14 27
cte-miR-31 MIMAT0009515 Capitella teleta miR-31 14 27
tca-miR-31-5p MIMAT0008362 Tribolium castaneum miR-31-5p 14 27
cfa-miR-31 MIMAT0006599 Canis familiaris miR-31 14 27
odi-miR-31 MIMAT0006079 Oikopleura dioica miR-31 14 27
oan-miR-31-5p MIMAT0007111 Ornithorhynchus anatinus miR-31-5p 14 27
sme-miR-31b-5p MIMAT0003980 Schmidtea mediterranea miR-31b-5p 14 27
sme-miR-31a-5p MIMAT0003979 Schmidtea mediterranea miR-31a-5p 14 27
xtr-miR-31a MIMAT0003679 Xenopus tropicalis miR-31a 14 27
bta-miR-31 MIMAT0003548 Bos taurus miR-31 14 27
ptc-miR482a.2 MIMAT0006785 Populus trichocarpa miR482a.2 14 27
gga-miR-31-5p MIMAT0001189 Gallus gallus miR-31-5p 14 27
rno-miR-31a-5p MIMAT0000810 Rattus norvegicus miR-31a-5p 14 27
mmu-miR-31-5p MIMAT0000538 Mus musculus miR-31-5p 14 27
cel-miR-266 MIMAT0000322 Caenorhabditis elegans miR-266 14 27
hsa-miR-31-5p MIMAT0000089 Homo sapiens miR-31-5p 14 27
cel-miR-72-5p MIMAT0000044 Caenorhabditis elegans miR-72-5p 14 27
>pma-miR-1788b-3p MIMAT0019563 Petromyzon marinus miR-1788b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 cttgcctg 8
||||||||
Sbjct: 8 cttgcctg 1
>hsv1-miR-H4-3p MIMAT0008402 Herpes Simplex miR-H4-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cttgcctg 8
||||||||
Sbjct: 1 cttgcctg 8
>str-miR-72-5p MIMAT0033346 Strongyloides ratti miR-72-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>ppc-miR-8216-3p MIMAT0032863 Pristionchus pacificus miR-8216-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>cel-miR-8188-5p MIMAT0032789 Caenorhabditis elegans miR-8188-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>cel-miR-8187-3p MIMAT0032788 Caenorhabditis elegans miR-8187-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>prd-miR-72-5p MIMAT0030478 Panagrellus redivivus miR-72-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>lva-miR-31-5p MIMAT0032197 Lytechinus variegatus miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>pmi-miR-31-5p MIMAT0032147 Patiria miniata miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>mmu-miR-216c-3p MIMAT0029889 Mus musculus miR-216c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgcctg 8
|||||||
Sbjct: 2 ttgcctg 8
>cbn-miR-72b MIMAT0029717 Caenorhabditis brenneri miR-72b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>mmu-miR-6908-5p MIMAT0027716 Mus musculus miR-6908-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgcctg 8
|||||||
Sbjct: 1 ttgcctg 7
>hsa-miR-6894-3p MIMAT0027689 Homo sapiens miR-6894-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgcctg 8
|||||||
Sbjct: 1 ttgcctg 7
>ssc-miR-31 MIMAT0025360 Sus scrofa miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>ptr-miR-4742 MIMAT0024043 Pan troglodytes miR-4742
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgcctg 8
|||||||
Sbjct: 8 ttgcctg 2
>cgr-miR-31-5p MIMAT0023902 Cricetulus griseus miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>sly-miR482b MIMAT0023602 Solanum lycopersicum miR482b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgcct 7
|||||||
Sbjct: 2 cttgcct 8
>stu-miR482d-3p MIMAT0023600 Solanum tuberosum miR482d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgcct 7
|||||||
Sbjct: 2 cttgcct 8
>hco-miR-72 MIMAT0023498 Haemonchus contortus miR-72
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>osa-miR5806 MIMAT0023277 Oryza sativa miR5806
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgcctg 8
|||||||
Sbjct: 8 ttgcctg 2
>aca-miR-5442 MIMAT0022064 Anolis carolinensis miR-5442
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgcctg 8
|||||||
Sbjct: 8 ttgcctg 2
>aca-miR-31-5p MIMAT0021930 Anolis carolinensis miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>asu-miR-72-5p MIMAT0021468 Ascaris suum miR-72-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>hsa-miR-4742-5p MIMAT0019872 Homo sapiens miR-4742-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgcctg 8
|||||||
Sbjct: 8 ttgcctg 2
>tca-miR-3865-5p MIMAT0018814 Tribolium castaneum miR-3865-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>tgu-miR-31 MIMAT0014615 Taeniopygia guttata miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>ghr-miR482b MIMAT0014340 Gossypium hirsutum miR482b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgcct 7
|||||||
Sbjct: 2 cttgcct 8
>bma-miR-72 MIMAT0014107 Brugia malayi miR-72
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>eca-miR-31 MIMAT0013115 Equus caballus miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>dpu-miR-31 MIMAT0012659 Daphnia pulex miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>ppc-miR-72 MIMAT0011661 Pristionchus pacificus miR-72
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>crm-miR-72-5p MIMAT0011567 Caenorhabditis remanei miR-72-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>spu-miR-31 MIMAT0009657 Strongylocentrotus purpuratus miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>sko-miR-31 MIMAT0009614 Saccoglossus kowalevskii miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>lgi-miR-31 MIMAT0009566 Lottia gigantea miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>cte-miR-31 MIMAT0009515 Capitella teleta miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>tca-miR-31-5p MIMAT0008362 Tribolium castaneum miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>cfa-miR-31 MIMAT0006599 Canis familiaris miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>odi-miR-31 MIMAT0006079 Oikopleura dioica miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>oan-miR-31-5p MIMAT0007111 Ornithorhynchus anatinus miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>sme-miR-31b-5p MIMAT0003980 Schmidtea mediterranea miR-31b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>sme-miR-31a-5p MIMAT0003979 Schmidtea mediterranea miR-31a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>xtr-miR-31a MIMAT0003679 Xenopus tropicalis miR-31a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>bta-miR-31 MIMAT0003548 Bos taurus miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>ptc-miR482a.2 MIMAT0006785 Populus trichocarpa miR482a.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgcct 7
|||||||
Sbjct: 2 cttgcct 8
>gga-miR-31-5p MIMAT0001189 Gallus gallus miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>rno-miR-31a-5p MIMAT0000810 Rattus norvegicus miR-31a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>mmu-miR-31-5p MIMAT0000538 Mus musculus miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>cel-miR-266 MIMAT0000322 Caenorhabditis elegans miR-266
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>hsa-miR-31-5p MIMAT0000089 Homo sapiens miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
>cel-miR-72-5p MIMAT0000044 Caenorhabditis elegans miR-72-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgcct 7
|||||||
Sbjct: 7 cttgcct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 442
Number of extensions: 389
Number of successful extensions: 290
Number of sequences better than 100.0: 51
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 51
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
