BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9400-5p MIMAT0035346 Gyrodactylus salaris miR-9400-5p 14 20
eca-miR-9086 MIMAT0034631 Equus caballus miR-9086 14 20
ppe-miR6279 MIMAT0027308 Prunus persica miR6279 14 20
cin-miR-4115-5p MIMAT0016705 Ciona intestinalis miR-4115-5p 14 20
iltv-miR-I3 MIMAT0012726 Infectious laryngotracheitis miR-I3 14 20
bra-miR158-5p MIMAT0035701 Brassica rapa miR158-5p 12 80
dvi-miR-9545-3p MIMAT0035631 Drosophila virilis miR-9545-3p 12 80
efu-miR-9234b MIMAT0034848 Eptesicus fuscus miR-9234b 12 80
efu-miR-9234a MIMAT0034843 Eptesicus fuscus miR-9234a 12 80
eca-miR-9081 MIMAT0034626 Equus caballus miR-9081 12 80
eca-miR-9066 MIMAT0034611 Equus caballus miR-9066 12 80
gra-miR8687 MIMAT0034060 Gossypium raimondii miR8687 12 80
pxy-miR-8521a MIMAT0033752 Plutella xylostella miR-8521a 12 80
pxy-miR-8521b MIMAT0033751 Plutella xylostella miR-8521b 12 80
ppc-miR-8304a-3p MIMAT0033133 Pristionchus pacificus miR-8304a-3p 12 80
ppc-miR-8304b-3p MIMAT0033074 Pristionchus pacificus miR-8304b-3p 12 80
ppc-miR-8229a-5p MIMAT0032902 Pristionchus pacificus miR-8229a-5p 12 80
ppc-miR-8218a-3p MIMAT0032867 Pristionchus pacificus miR-8218a-3p 12 80
ssa-miR-8162-5p MIMAT0032755 Salmo salar miR-8162-5p 12 80
bbe-miR-4863-5p MIMAT0031683 Branchiostoma belcheri miR-4863-5p 12 80
prd-miR-7902-5p MIMAT0030614 Panagrellus redivivus miR-7902-5p 12 80
oan-miR-7423-3p MIMAT0028997 Ornithorhynchus anatinus miR-7423-3p 12 80
mmu-miR-7233-3p MIMAT0028435 Mus musculus miR-7233-3p 12 80
mml-miR-7163-5p MIMAT0028244 Macaca mulatta miR-7163-5p 12 80
ddi-miR-7102 MIMAT0028105 Dictyostelium discoideum miR-7102 12 80
hsa-miR-6818-3p MIMAT0027537 Homo sapiens miR-6818-3p 12 80
ptc-miR6425e MIMAT0025219 Populus trichocarpa miR6425e 12 80
ptc-miR6425d-5p MIMAT0025214 Populus trichocarpa miR6425d-5p 12 80
ptc-miR6425c-5p MIMAT0025207 Populus trichocarpa miR6425c-5p 12 80
ptc-miR6425b-5p MIMAT0025198 Populus trichocarpa miR6425b-5p 12 80
ptc-miR6425a-5p MIMAT0025190 Populus trichocarpa miR6425a-5p 12 80
hvu-miR5049c MIMAT0024803 Hordeum vulgare miR5049c 12 80
cgr-miR-6092 MIMAT0024019 Cricetulus griseus miR-6092 12 80
ath-miR5657 MIMAT0022430 Arabidopsis thaliana miR5657 12 80
ath-miR5024-5p MIMAT0020530 Arabidopsis thaliana miR5024-5p 12 80
bfl-miR-4863-5p MIMAT0020095 Branchiostoma floridae miR-4863-5p 12 80
mmu-miR-3967 MIMAT0019351 Mus musculus miR-3967 12 80
ame-miR-3786 MIMAT0018565 Apis mellifera miR-3786 12 80
hsa-miR-4288 MIMAT0016918 Homo sapiens miR-4288 12 80
cin-miR-4073-5p MIMAT0016634 Ciona intestinalis miR-4073-5p 12 80
aly-miR158a-5p MIMAT0017421 Arabidopsis lyrata miR158a-5p 12 80
api-miR-3021 MIMAT0014757 Acyrthosiphon pisum miR-3021 12 80
rlcv-miR-rL1-33-5p MIMAT0016959 Rhesus lymphocryptovirus miR-rL1... 12 80
osa-miR2923 MIMAT0014054 Oryza sativa miR2923 12 80
bmo-miR-2856-5p MIMAT0013792 Bombyx mori miR-2856-5p 12 80
dps-miR-2528 MIMAT0012306 Drosophila pseudoobscura miR-2528 12 80
sme-miR-1992-5p MIMAT0012142 Schmidtea mediterranea miR-1992-5p 12 80
mtr-miR1510a-5p MIMAT0010032 Medicago truncatula miR1510a-5p 12 80
dwi-miR-309 MIMAT0009021 Drosophila willistoni miR-309 12 80
bmo-miR-2b-5p MIMAT0015273 Bombyx mori miR-2b-5p 12 80
osa-miR444c.1 MIMAT0005971 Oryza sativa miR444c.1 12 80
osa-miR444b.1 MIMAT0005969 Oryza sativa miR444b.1 12 80
oan-miR-1422n-3p MIMAT0007102 Ornithorhynchus anatinus miR-1422n-3p 12 80
cre-miR1149.2 MIMAT0005389 Chlamydomonas reinhardtii miR1149.2 12 80
ath-miR158a-5p MIMAT0031873 Arabidopsis thaliana miR158a-5p 12 80
>gsa-miR-9400-5p MIMAT0035346 Gyrodactylus salaris miR-9400-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgtct 7
|||||||
Sbjct: 8 cttgtct 2
>eca-miR-9086 MIMAT0034631 Equus caballus miR-9086
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgtct 7
|||||||
Sbjct: 1 cttgtct 7
>ppe-miR6279 MIMAT0027308 Prunus persica miR6279
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttgtct 7
|||||||
Sbjct: 8 cttgtct 2
>cin-miR-4115-5p MIMAT0016705 Ciona intestinalis miR-4115-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgtct 7
|||||||
Sbjct: 1 cttgtct 7
>iltv-miR-I3 MIMAT0012726 Infectious laryngotracheitis miR-I3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttgtct 7
|||||||
Sbjct: 2 cttgtct 8
>bra-miR158-5p MIMAT0035701 Brassica rapa miR158-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>dvi-miR-9545-3p MIMAT0035631 Drosophila virilis miR-9545-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>efu-miR-9234b MIMAT0034848 Eptesicus fuscus miR-9234b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>efu-miR-9234a MIMAT0034843 Eptesicus fuscus miR-9234a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>eca-miR-9081 MIMAT0034626 Equus caballus miR-9081
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 8 ttgtct 3
>eca-miR-9066 MIMAT0034611 Equus caballus miR-9066
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 7 ttgtct 2
>gra-miR8687 MIMAT0034060 Gossypium raimondii miR8687
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 8 ttgtct 3
>pxy-miR-8521a MIMAT0033752 Plutella xylostella miR-8521a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgtc 6
||||||
Sbjct: 1 cttgtc 6
>pxy-miR-8521b MIMAT0033751 Plutella xylostella miR-8521b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgtc 6
||||||
Sbjct: 1 cttgtc 6
>ppc-miR-8304a-3p MIMAT0033133 Pristionchus pacificus
miR-8304a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>ppc-miR-8304b-3p MIMAT0033074 Pristionchus pacificus
miR-8304b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>ppc-miR-8229a-5p MIMAT0032902 Pristionchus pacificus
miR-8229a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>ppc-miR-8218a-3p MIMAT0032867 Pristionchus pacificus
miR-8218a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 8 ttgtct 3
>ssa-miR-8162-5p MIMAT0032755 Salmo salar miR-8162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>bbe-miR-4863-5p MIMAT0031683 Branchiostoma belcheri miR-4863-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 6 ttgtct 1
>prd-miR-7902-5p MIMAT0030614 Panagrellus redivivus miR-7902-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgtc 6
||||||
Sbjct: 3 cttgtc 8
>oan-miR-7423-3p MIMAT0028997 Ornithorhynchus anatinus
miR-7423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>mmu-miR-7233-3p MIMAT0028435 Mus musculus miR-7233-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>mml-miR-7163-5p MIMAT0028244 Macaca mulatta miR-7163-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>ddi-miR-7102 MIMAT0028105 Dictyostelium discoideum miR-7102
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>hsa-miR-6818-3p MIMAT0027537 Homo sapiens miR-6818-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>ptc-miR6425e MIMAT0025219 Populus trichocarpa miR6425e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>ptc-miR6425d-5p MIMAT0025214 Populus trichocarpa miR6425d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>ptc-miR6425c-5p MIMAT0025207 Populus trichocarpa miR6425c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>ptc-miR6425b-5p MIMAT0025198 Populus trichocarpa miR6425b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>ptc-miR6425a-5p MIMAT0025190 Populus trichocarpa miR6425a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>hvu-miR5049c MIMAT0024803 Hordeum vulgare miR5049c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 6 ttgtct 1
>cgr-miR-6092 MIMAT0024019 Cricetulus griseus miR-6092
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>ath-miR5657 MIMAT0022430 Arabidopsis thaliana miR5657
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>ath-miR5024-5p MIMAT0020530 Arabidopsis thaliana miR5024-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>bfl-miR-4863-5p MIMAT0020095 Branchiostoma floridae miR-4863-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 6 ttgtct 1
>mmu-miR-3967 MIMAT0019351 Mus musculus miR-3967
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgtc 6
||||||
Sbjct: 3 cttgtc 8
>ame-miR-3786 MIMAT0018565 Apis mellifera miR-3786
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttgtc 6
||||||
Sbjct: 1 cttgtc 6
>hsa-miR-4288 MIMAT0016918 Homo sapiens miR-4288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>cin-miR-4073-5p MIMAT0016634 Ciona intestinalis miR-4073-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>aly-miR158a-5p MIMAT0017421 Arabidopsis lyrata miR158a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>api-miR-3021 MIMAT0014757 Acyrthosiphon pisum miR-3021
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>rlcv-miR-rL1-33-5p MIMAT0016959 Rhesus lymphocryptovirus
miR-rL1-33-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>osa-miR2923 MIMAT0014054 Oryza sativa miR2923
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 6 ttgtct 1
>bmo-miR-2856-5p MIMAT0013792 Bombyx mori miR-2856-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>dps-miR-2528 MIMAT0012306 Drosophila pseudoobscura miR-2528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>sme-miR-1992-5p MIMAT0012142 Schmidtea mediterranea miR-1992-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>mtr-miR1510a-5p MIMAT0010032 Medicago truncatula miR1510a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 1 ttgtct 6
>dwi-miR-309 MIMAT0009021 Drosophila willistoni miR-309
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 8 ttgtct 3
>bmo-miR-2b-5p MIMAT0015273 Bombyx mori miR-2b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttgtc 6
||||||
Sbjct: 8 cttgtc 3
>osa-miR444c.1 MIMAT0005971 Oryza sativa miR444c.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>osa-miR444b.1 MIMAT0005969 Oryza sativa miR444b.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>oan-miR-1422n-3p MIMAT0007102 Ornithorhynchus anatinus
miR-1422n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtct 7
||||||
Sbjct: 7 ttgtct 2
>cre-miR1149.2 MIMAT0005389 Chlamydomonas reinhardtii miR1149.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
>ath-miR158a-5p MIMAT0031873 Arabidopsis thaliana miR158a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtct 7
||||||
Sbjct: 3 ttgtct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 79
Number of extensions: 74
Number of successful extensions: 55
Number of sequences better than 100.0: 55
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 55
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
