BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d10-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D10-3p MIMAT0028182 Duck enteritis miR-D10-3p 16 6.9
ssc-miR-371-5p MIMAT0037081 Sus scrofa miR-371-5p 14 27
ocu-miR-290-5p MIMAT0036327 Oryctolagus cuniculus miR-290-5p 14 27
eca-miR-8973 MIMAT0034510 Equus caballus miR-8973 14 27
eca-miR-8945 MIMAT0034474 Equus caballus miR-8945 14 27
cfa-miR-8812 MIMAT0034302 Canis familiaris miR-8812 14 27
ppc-miR-8311-3p MIMAT0033153 Pristionchus pacificus miR-8311-3p 14 27
hsa-miR-8055 MIMAT0030982 Homo sapiens miR-8055 14 27
prd-miR-7883c-5p MIMAT0030696 Panagrellus redivivus miR-7883c-5p 14 27
prd-miR-7883b-5p MIMAT0030528 Panagrellus redivivus miR-7883b-5p 14 27
prd-miR-7883a-5p MIMAT0030526 Panagrellus redivivus miR-7883a-5p 14 27
mmu-miR-292b-5p MIMAT0029864 Mus musculus miR-292b-5p 14 27
mes-miR397 MIMAT0029279 Manihot esculenta miR397 14 27
ghr-miR7488 MIMAT0029130 Gossypium hirsutum miR7488 14 27
ggo-miR-371b MIMAT0024267 Gorilla gorilla miR-371b 14 27
ath-miR5645e MIMAT0022446 Arabidopsis thaliana miR5645e 14 27
ath-miR5645f MIMAT0022441 Arabidopsis thaliana miR5645f 14 27
ath-miR5645d MIMAT0022433 Arabidopsis thaliana miR5645d 14 27
ath-miR5645b MIMAT0022409 Arabidopsis thaliana miR5645b 14 27
ath-miR5645a MIMAT0022408 Arabidopsis thaliana miR5645a 14 27
hsa-miR-371b-5p MIMAT0019892 Homo sapiens miR-371b-5p 14 27
tca-miR-3838-3p MIMAT0018721 Tribolium castaneum miR-3838-3p 14 27
ppy-miR-888 MIMAT0016123 Pongo pygmaeus miR-888 14 27
ppy-miR-371-5p MIMAT0015858 Pongo pygmaeus miR-371-5p 14 27
aly-miR3447-3p MIMAT0017730 Arabidopsis lyrata miR3447-3p 14 27
bmo-miR-3296-5p MIMAT0015483 Bombyx mori miR-3296-5p 14 27
eca-miR-371-5p MIMAT0013013 Equus caballus miR-371-5p 14 27
rno-miR-295-5p MIMAT0012849 Rattus norvegicus miR-295-5p 14 27
rno-miR-293-5p MIMAT0012847 Rattus norvegicus miR-293-5p 14 27
ptr-miR-373 MIMAT0012802 Pan troglodytes miR-373 14 27
cfa-miR-371 MIMAT0007747 Canis familiaris miR-371 14 27
mml-miR-888 MIMAT0006527 Macaca mulatta miR-888 14 27
mml-miR-371-5p MIMAT0006296 Macaca mulatta miR-371-5p 14 27
hsa-miR-888-5p MIMAT0004916 Homo sapiens miR-888-5p 14 27
dre-miR-732 MIMAT0003762 Danio rerio miR-732 14 27
hsa-miR-616-5p MIMAT0003284 Homo sapiens miR-616-5p 14 27
rno-miR-292-5p MIMAT0000896 Rattus norvegicus miR-292-5p 14 27
hsa-miR-373-5p MIMAT0000725 Homo sapiens miR-373-5p 14 27
hsa-miR-371a-5p MIMAT0004687 Homo sapiens miR-371a-5p 14 27
mmu-miR-295-5p MIMAT0004575 Mus musculus miR-295-5p 14 27
mmu-miR-294-5p MIMAT0004574 Mus musculus miR-294-5p 14 27
mmu-miR-293-5p MIMAT0004573 Mus musculus miR-293-5p 14 27
mmu-miR-292a-5p MIMAT0000369 Mus musculus miR-292a-5p 14 27
mmu-miR-290a-5p MIMAT0000366 Mus musculus miR-290a-5p 14 27
>dev-miR-D10-3p MIMAT0028182 Duck enteritis miR-D10-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctttgagt 8
||||||||
Sbjct: 1 ctttgagt 8
>ssc-miR-371-5p MIMAT0037081 Sus scrofa miR-371-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>ocu-miR-290-5p MIMAT0036327 Oryctolagus cuniculus miR-290-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>eca-miR-8973 MIMAT0034510 Equus caballus miR-8973
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctttgag 7
|||||||
Sbjct: 1 ctttgag 7
>eca-miR-8945 MIMAT0034474 Equus caballus miR-8945
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctttgag 7
|||||||
Sbjct: 7 ctttgag 1
>cfa-miR-8812 MIMAT0034302 Canis familiaris miR-8812
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 1 tttgagt 7
>ppc-miR-8311-3p MIMAT0033153 Pristionchus pacificus miR-8311-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>hsa-miR-8055 MIMAT0030982 Homo sapiens miR-8055
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctttgag 7
|||||||
Sbjct: 1 ctttgag 7
>prd-miR-7883c-5p MIMAT0030696 Panagrellus redivivus
miR-7883c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>prd-miR-7883b-5p MIMAT0030528 Panagrellus redivivus
miR-7883b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>prd-miR-7883a-5p MIMAT0030526 Panagrellus redivivus
miR-7883a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>mmu-miR-292b-5p MIMAT0029864 Mus musculus miR-292b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mes-miR397 MIMAT0029279 Manihot esculenta miR397
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 1 tttgagt 7
>ghr-miR7488 MIMAT0029130 Gossypium hirsutum miR7488
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>ggo-miR-371b MIMAT0024267 Gorilla gorilla miR-371b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>ath-miR5645e MIMAT0022446 Arabidopsis thaliana miR5645e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>ath-miR5645f MIMAT0022441 Arabidopsis thaliana miR5645f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>ath-miR5645d MIMAT0022433 Arabidopsis thaliana miR5645d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>ath-miR5645b MIMAT0022409 Arabidopsis thaliana miR5645b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>ath-miR5645a MIMAT0022408 Arabidopsis thaliana miR5645a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>hsa-miR-371b-5p MIMAT0019892 Homo sapiens miR-371b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>tca-miR-3838-3p MIMAT0018721 Tribolium castaneum miR-3838-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 1 tttgagt 7
>ppy-miR-888 MIMAT0016123 Pongo pygmaeus miR-888
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 8 tttgagt 2
>ppy-miR-371-5p MIMAT0015858 Pongo pygmaeus miR-371-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>aly-miR3447-3p MIMAT0017730 Arabidopsis lyrata miR3447-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 1 tttgagt 7
>bmo-miR-3296-5p MIMAT0015483 Bombyx mori miR-3296-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgagt 8
|||||||
Sbjct: 2 tttgagt 8
>eca-miR-371-5p MIMAT0013013 Equus caballus miR-371-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>rno-miR-295-5p MIMAT0012849 Rattus norvegicus miR-295-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>rno-miR-293-5p MIMAT0012847 Rattus norvegicus miR-293-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>ptr-miR-373 MIMAT0012802 Pan troglodytes miR-373
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>cfa-miR-371 MIMAT0007747 Canis familiaris miR-371
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mml-miR-888 MIMAT0006527 Macaca mulatta miR-888
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 8 tttgagt 2
>mml-miR-371-5p MIMAT0006296 Macaca mulatta miR-371-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>hsa-miR-888-5p MIMAT0004916 Homo sapiens miR-888-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 8 tttgagt 2
>dre-miR-732 MIMAT0003762 Danio rerio miR-732
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctttgag 7
|||||||
Sbjct: 7 ctttgag 1
>hsa-miR-616-5p MIMAT0003284 Homo sapiens miR-616-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>rno-miR-292-5p MIMAT0000896 Rattus norvegicus miR-292-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>hsa-miR-373-5p MIMAT0000725 Homo sapiens miR-373-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>hsa-miR-371a-5p MIMAT0004687 Homo sapiens miR-371a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mmu-miR-295-5p MIMAT0004575 Mus musculus miR-295-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mmu-miR-294-5p MIMAT0004574 Mus musculus miR-294-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mmu-miR-293-5p MIMAT0004573 Mus musculus miR-293-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mmu-miR-292a-5p MIMAT0000369 Mus musculus miR-292a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
>mmu-miR-290a-5p MIMAT0000366 Mus musculus miR-290a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgagt 8
|||||||
Sbjct: 7 tttgagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 187
Number of extensions: 142
Number of successful extensions: 122
Number of sequences better than 100.0: 44
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 44
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
