BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s77
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR5513 MIMAT0022146 Oryza sativa miR5513 16 6.9
dme-miR-4967-3p MIMAT0020193 Drosophila melanogaster miR-4967-3p 16 6.9
hsa-miR-5688 MIMAT0022479 Homo sapiens miR-5688 14 27
ath-miR5017-5p MIMAT0032120 Arabidopsis thaliana miR5017-5p 14 27
ath-miR4239 MIMAT0017947 Arabidopsis thaliana miR4239 14 27
cin-miR-4164-3p MIMAT0016772 Ciona intestinalis miR-4164-3p 14 27
bmo-miR-3358 MIMAT0015544 Bombyx mori miR-3358 14 27
dps-miR-2575-5p MIMAT0012420 Drosophila pseudoobscura miR-2575-5p 14 27
smo-miR1112-5p MIMAT0005269 Selaginella moellendorffii miR1112-5p 14 27
>osa-miR5513 MIMAT0022146 Oryza sativa miR5513
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ctttgtta 8
||||||||
Sbjct: 8 ctttgtta 1
>dme-miR-4967-3p MIMAT0020193 Drosophila melanogaster
miR-4967-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ctttgtta 8
||||||||
Sbjct: 8 ctttgtta 1
>hsa-miR-5688 MIMAT0022479 Homo sapiens miR-5688
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgtta 8
|||||||
Sbjct: 7 tttgtta 1
>ath-miR5017-5p MIMAT0032120 Arabidopsis thaliana miR5017-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgtta 8
|||||||
Sbjct: 2 tttgtta 8
>ath-miR4239 MIMAT0017947 Arabidopsis thaliana miR4239
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgtta 8
|||||||
Sbjct: 1 tttgtta 7
>cin-miR-4164-3p MIMAT0016772 Ciona intestinalis miR-4164-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctttgtt 7
|||||||
Sbjct: 2 ctttgtt 8
>bmo-miR-3358 MIMAT0015544 Bombyx mori miR-3358
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgtta 8
|||||||
Sbjct: 2 tttgtta 8
>dps-miR-2575-5p MIMAT0012420 Drosophila pseudoobscura
miR-2575-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgtta 8
|||||||
Sbjct: 1 tttgtta 7
>smo-miR1112-5p MIMAT0005269 Selaginella moellendorffii
miR1112-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctttgtt 7
|||||||
Sbjct: 2 ctttgtt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 212
Number of extensions: 201
Number of successful extensions: 148
Number of sequences better than 100.0: 9
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
