BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR123
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9817-5p MIMAT0037035 Sus scrofa miR-9817-5p 14 20
tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a 14 20
gra-miR8656 MIMAT0034021 Gossypium raimondii miR8656 14 20
mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p 14 20
hsa-miR-6124 MIMAT0024597 Homo sapiens miR-6124 14 20
ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740 14 20
dsi-miR-967-3p MIMAT0012438 Drosophila simulans miR-967-3p 14 20
dme-miR-967-3p MIMAT0020863 Drosophila melanogaster miR-967-3p 14 20
ssc-miR-9859-3p MIMAT0037078 Sus scrofa miR-9859-3p 12 80
tch-miR-9771g MIMAT0036542 Tupaia chinensis miR-9771g 12 80
cpa-miR8140 MIMAT0031837 Carica papaya miR8140 12 80
prd-miR-7914-3p MIMAT0030659 Panagrellus redivivus miR-7914-3p 12 80
bdi-miR7772-5p MIMAT0030294 Brachypodium distachyon miR7772-5p 12 80
bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon miR7708a-5p 12 80
tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p 12 80
gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p 12 80
mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p 12 80
mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p 12 80
gga-miR-6572-5p MIMAT0025651 Gallus gallus miR-6572-5p 12 80
ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444 12 80
osa-miR6255 MIMAT0024878 Oryza sativa miR6255 12 80
mse-miR-6093 MIMAT0024501 Manduca sexta miR-6093 12 80
hco-miR-5959 MIMAT0023463 Haemonchus contortus miR-5959 12 80
osa-miR812u MIMAT0023273 Oryza sativa miR812u 12 80
osa-miR812t MIMAT0023272 Oryza sativa miR812t 12 80
mtr-miR5558-5p MIMAT0022219 Medicago truncatula miR5558-5p 12 80
mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p 12 80
mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p 12 80
osa-miR5524 MIMAT0022159 Oryza sativa miR5524 12 80
aca-miR-5412-3p MIMAT0022031 Anolis carolinensis miR-5412-3p 12 80
aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403 12 80
bdi-miR5198 MIMAT0020755 Brachypodium distachyon miR5198 12 80
hsa-miR-5003-3p MIMAT0021026 Homo sapiens miR-5003-3p 12 80
hsa-miR-4668-5p MIMAT0019745 Homo sapiens miR-4668-5p 12 80
osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p 12 80
csi-miR472 MIMAT0018473 Citrus sinensis miR472 12 80
gma-miR4393b MIMAT0018317 Glycine max miR4393b 12 80
ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729 12 80
ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221 12 80
cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p 12 80
cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p 12 80
cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p 12 80
cin-miR-4000a-2-3p MIMAT0026471 Ciona intestinalis miR-4000a-2-3p 12 80
cin-miR-4000a-3p MIMAT0016431 Ciona intestinalis miR-4000a-3p 12 80
esi-miR3468-3p MIMAT0017790 Ectocarpus siliculosus miR3468-3p 12 80
hsa-miR-3148 MIMAT0015021 Homo sapiens miR-3148 12 80
eca-miR-684 MIMAT0012930 Equus caballus miR-684 12 80
mtr-miR2679c MIMAT0013509 Medicago truncatula miR2679c 12 80
mtr-miR2679b MIMAT0013508 Medicago truncatula miR2679b 12 80
mtr-miR2679a MIMAT0013507 Medicago truncatula miR2679a 12 80
mtr-miR2629g MIMAT0013369 Medicago truncatula miR2629g 12 80
mtr-miR2629f MIMAT0013368 Medicago truncatula miR2629f 12 80
mtr-miR2629c MIMAT0013367 Medicago truncatula miR2629c 12 80
mtr-miR2629b MIMAT0013366 Medicago truncatula miR2629b 12 80
mtr-miR2629e MIMAT0013365 Medicago truncatula miR2629e 12 80
mtr-miR2629d MIMAT0013364 Medicago truncatula miR2629d 12 80
mtr-miR2629a MIMAT0013363 Medicago truncatula miR2629a 12 80
bta-miR-2284m MIMAT0011976 Bos taurus miR-2284m 12 80
bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p 12 80
bta-miR-2284k MIMAT0011907 Bos taurus miR-2284k 12 80
bta-miR-2284j MIMAT0011827 Bos taurus miR-2284j 12 80
mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p 12 80
oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus miR-1422o-3p 12 80
oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus miR-1422g-3p 12 80
oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus miR-1422e-3p 12 80
smo-miR1103-3p MIMAT0005276 Selaginella moellendorffii miR1103-3p 12 80
mmu-miR-684 MIMAT0003462 Mus musculus miR-684 12 80
ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b 12 80
ptc-miR472a MIMAT0002060 Populus trichocarpa miR472a 12 80
cel-miR-253-5p MIMAT0000309 Caenorhabditis elegans miR-253-5p 12 80
>ssc-miR-9817-5p MIMAT0037035 Sus scrofa miR-9817-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttttcc 7
|||||||
Sbjct: 1 cttttcc 7
>tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttttcc 7
|||||||
Sbjct: 7 cttttcc 1
>gra-miR8656 MIMAT0034021 Gossypium raimondii miR8656
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttttcc 7
|||||||
Sbjct: 8 cttttcc 2
>mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttttcc 7
|||||||
Sbjct: 2 cttttcc 8
>hsa-miR-6124 MIMAT0024597 Homo sapiens miR-6124
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttttcc 7
|||||||
Sbjct: 8 cttttcc 2
>ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cttttcc 7
|||||||
Sbjct: 7 cttttcc 1
>dsi-miR-967-3p MIMAT0012438 Drosophila simulans miR-967-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttttcc 7
|||||||
Sbjct: 1 cttttcc 7
>dme-miR-967-3p MIMAT0020863 Drosophila melanogaster miR-967-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttttcc 7
|||||||
Sbjct: 1 cttttcc 7
>ssc-miR-9859-3p MIMAT0037078 Sus scrofa miR-9859-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 8 cttttc 3
>tch-miR-9771g MIMAT0036542 Tupaia chinensis miR-9771g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 6 cttttc 1
>cpa-miR8140 MIMAT0031837 Carica papaya miR8140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 1 cttttc 6
>prd-miR-7914-3p MIMAT0030659 Panagrellus redivivus miR-7914-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 8 cttttc 3
>bdi-miR7772-5p MIMAT0030294 Brachypodium distachyon miR7772-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon
miR7708a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>gga-miR-6572-5p MIMAT0025651 Gallus gallus miR-6572-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>osa-miR6255 MIMAT0024878 Oryza sativa miR6255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>mse-miR-6093 MIMAT0024501 Manduca sexta miR-6093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>hco-miR-5959 MIMAT0023463 Haemonchus contortus miR-5959
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>osa-miR812u MIMAT0023273 Oryza sativa miR812u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>osa-miR812t MIMAT0023272 Oryza sativa miR812t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>mtr-miR5558-5p MIMAT0022219 Medicago truncatula miR5558-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 6 ttttcc 1
>mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 6 ttttcc 1
>osa-miR5524 MIMAT0022159 Oryza sativa miR5524
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 7 ttttcc 2
>aca-miR-5412-3p MIMAT0022031 Anolis carolinensis miR-5412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 6 ttttcc 1
>aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>bdi-miR5198 MIMAT0020755 Brachypodium distachyon miR5198
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>hsa-miR-5003-3p MIMAT0021026 Homo sapiens miR-5003-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>hsa-miR-4668-5p MIMAT0019745 Homo sapiens miR-4668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>csi-miR472 MIMAT0018473 Citrus sinensis miR472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>gma-miR4393b MIMAT0018317 Glycine max miR4393b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 8 cttttc 3
>ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 1 cttttc 6
>cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>cin-miR-4000a-2-3p MIMAT0026471 Ciona intestinalis
miR-4000a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>cin-miR-4000a-3p MIMAT0016431 Ciona intestinalis miR-4000a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>esi-miR3468-3p MIMAT0017790 Ectocarpus siliculosus miR3468-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 3 cttttc 8
>hsa-miR-3148 MIMAT0015021 Homo sapiens miR-3148
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 7 ttttcc 2
>eca-miR-684 MIMAT0012930 Equus caballus miR-684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2679c MIMAT0013509 Medicago truncatula miR2679c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 1 cttttc 6
>mtr-miR2679b MIMAT0013508 Medicago truncatula miR2679b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 1 cttttc 6
>mtr-miR2679a MIMAT0013507 Medicago truncatula miR2679a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 1 cttttc 6
>mtr-miR2629g MIMAT0013369 Medicago truncatula miR2629g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629f MIMAT0013368 Medicago truncatula miR2629f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629c MIMAT0013367 Medicago truncatula miR2629c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629b MIMAT0013366 Medicago truncatula miR2629b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629e MIMAT0013365 Medicago truncatula miR2629e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629d MIMAT0013364 Medicago truncatula miR2629d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629a MIMAT0013363 Medicago truncatula miR2629a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>bta-miR-2284m MIMAT0011976 Bos taurus miR-2284m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 6 cttttc 1
>bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>bta-miR-2284k MIMAT0011907 Bos taurus miR-2284k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 6 cttttc 1
>bta-miR-2284j MIMAT0011827 Bos taurus miR-2284j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttttc 6
||||||
Sbjct: 6 cttttc 1
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus
miR-1422o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 8 ttttcc 3
>oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus
miR-1422g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 6 ttttcc 1
>oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus
miR-1422e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 6 ttttcc 1
>smo-miR1103-3p MIMAT0005276 Selaginella moellendorffii
miR1103-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttcc 7
||||||
Sbjct: 7 ttttcc 2
>mmu-miR-684 MIMAT0003462 Mus musculus miR-684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 3 ttttcc 8
>ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>ptc-miR472a MIMAT0002060 Populus trichocarpa miR472a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttcc 7
||||||
Sbjct: 1 ttttcc 6
>cel-miR-253-5p MIMAT0000309 Caenorhabditis elegans miR-253-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cttttc 6
||||||
Sbjct: 1 cttttc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 105
Number of extensions: 97
Number of successful extensions: 70
Number of sequences better than 100.0: 70
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 70
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
