BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-1462-5p MIMAT0007340 Gallus gallus miR-1462-5p 16 6.9
rno-miR-742-3p MIMAT0005333 Rattus norvegicus miR-742-3p 16 6.9
mmu-miR-742-3p MIMAT0004237 Mus musculus miR-742-3p 16 6.9
ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p 14 27
sbi-miR5568d-5p MIMAT0026422 Sorghum bicolor miR5568d-5p 14 27
pma-miR-1d MIMAT0019369 Petromyzon marinus miR-1d 14 27
bmo-miR-3267a MIMAT0015451 Bombyx mori miR-3267a 14 27
hsa-miR-3160-5p MIMAT0019212 Homo sapiens miR-3160-5p 14 27
hsa-miR-3119 MIMAT0014981 Homo sapiens miR-3119 14 27
cte-miR-2719 MIMAT0013588 Capitella teleta miR-2719 14 27
oan-miR-1351-3p MIMAT0026756 Ornithorhynchus anatinus miR-1351-3p 14 27
smo-miR1090 MIMAT0005243 Selaginella moellendorffii miR1090 14 27
cel-miR-90-5p MIMAT0020326 Caenorhabditis elegans miR-90-5p 14 27
>gga-miR-1462-5p MIMAT0007340 Gallus gallus miR-1462-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaaagcca 8
||||||||
Sbjct: 8 gaaagcca 1
>rno-miR-742-3p MIMAT0005333 Rattus norvegicus miR-742-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaaagcca 8
||||||||
Sbjct: 1 gaaagcca 8
>mmu-miR-742-3p MIMAT0004237 Mus musculus miR-742-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaaagcca 8
||||||||
Sbjct: 1 gaaagcca 8
>ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaagcc 7
|||||||
Sbjct: 8 gaaagcc 2
>sbi-miR5568d-5p MIMAT0026422 Sorghum bicolor miR5568d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcca 8
|||||||
Sbjct: 7 aaagcca 1
>pma-miR-1d MIMAT0019369 Petromyzon marinus miR-1d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcca 8
|||||||
Sbjct: 7 aaagcca 1
>bmo-miR-3267a MIMAT0015451 Bombyx mori miR-3267a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcca 8
|||||||
Sbjct: 7 aaagcca 1
>hsa-miR-3160-5p MIMAT0019212 Homo sapiens miR-3160-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaagcc 7
|||||||
Sbjct: 7 gaaagcc 1
>hsa-miR-3119 MIMAT0014981 Homo sapiens miR-3119
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcca 8
|||||||
Sbjct: 7 aaagcca 1
>cte-miR-2719 MIMAT0013588 Capitella teleta miR-2719
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcca 8
|||||||
Sbjct: 7 aaagcca 1
>oan-miR-1351-3p MIMAT0026756 Ornithorhynchus anatinus
miR-1351-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcca 8
|||||||
Sbjct: 8 aaagcca 2
>smo-miR1090 MIMAT0005243 Selaginella moellendorffii miR1090
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaagcc 7
|||||||
Sbjct: 2 gaaagcc 8
>cel-miR-90-5p MIMAT0020326 Caenorhabditis elegans miR-90-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaagcc 7
|||||||
Sbjct: 8 gaaagcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 168
Number of extensions: 152
Number of successful extensions: 137
Number of sequences better than 100.0: 13
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
