BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r87-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p 16 6.9
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p 16 6.9
chi-miR-22-5p MIMAT0036075 Capra hircus miR-22-5p 14 27
eca-miR-8910 MIMAT0034438 Equus caballus miR-8910 14 27
ssa-miR-22a-5p MIMAT0032544 Salmo salar miR-22a-5p 14 27
pol-miR-22-5p MIMAT0025426 Paralichthys olivaceus miR-22-5p 14 27
cgr-miR-22-5p MIMAT0023856 Cricetulus griseus miR-22-5p 14 27
tca-miR-6016-5p MIMAT0023573 Tribolium castaneum miR-6016-5p 14 27
aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p 14 27
aca-miR-22-5p MIMAT0021887 Anolis carolinensis miR-22-5p 14 27
hsa-miR-4511 MIMAT0019048 Homo sapiens miR-4511 14 27
gma-miR1520j MIMAT0018263 Glycine max miR1520j 14 27
rno-miR-3568 MIMAT0017848 Rattus norvegicus miR-3568 14 27
ssc-miR-22-5p MIMAT0015709 Sus scrofa miR-22-5p 14 27
gga-miR-22-5p MIMAT0007287 Gallus gallus miR-22-5p 14 27
oan-miR-22-5p MIMAT0006961 Ornithorhynchus anatinus miR-22-5p 14 27
mdo-miR-22-5p MIMAT0026651 Monodelphis domestica miR-22-5p 14 27
bta-miR-22-5p MIMAT0003826 Bos taurus miR-22-5p 14 27
xtr-miR-22-5p MIMAT0003671 Xenopus tropicalis miR-22-5p 14 27
dre-miR-22a-5p MIMAT0031942 Danio rerio miR-22a-5p 14 27
rno-miR-22-5p MIMAT0003152 Rattus norvegicus miR-22-5p 14 27
mmu-miR-22-5p MIMAT0004629 Mus musculus miR-22-5p 14 27
hsa-miR-22-5p MIMAT0004495 Homo sapiens miR-22-5p 14 27
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaagaacg 8
||||||||
Sbjct: 8 gaagaacg 1
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaagaacg 8
||||||||
Sbjct: 8 gaagaacg 1
>chi-miR-22-5p MIMAT0036075 Capra hircus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>eca-miR-8910 MIMAT0034438 Equus caballus miR-8910
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaac 7
|||||||
Sbjct: 2 gaagaac 8
>ssa-miR-22a-5p MIMAT0032544 Salmo salar miR-22a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>pol-miR-22-5p MIMAT0025426 Paralichthys olivaceus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>cgr-miR-22-5p MIMAT0023856 Cricetulus griseus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>tca-miR-6016-5p MIMAT0023573 Tribolium castaneum miR-6016-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaac 7
|||||||
Sbjct: 2 gaagaac 8
>aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagaacg 8
|||||||
Sbjct: 8 aagaacg 2
>aca-miR-22-5p MIMAT0021887 Anolis carolinensis miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>hsa-miR-4511 MIMAT0019048 Homo sapiens miR-4511
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaac 7
|||||||
Sbjct: 1 gaagaac 7
>gma-miR1520j MIMAT0018263 Glycine max miR1520j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagaacg 8
|||||||
Sbjct: 1 aagaacg 7
>rno-miR-3568 MIMAT0017848 Rattus norvegicus miR-3568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>ssc-miR-22-5p MIMAT0015709 Sus scrofa miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>gga-miR-22-5p MIMAT0007287 Gallus gallus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>oan-miR-22-5p MIMAT0006961 Ornithorhynchus anatinus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>mdo-miR-22-5p MIMAT0026651 Monodelphis domestica miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>bta-miR-22-5p MIMAT0003826 Bos taurus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>xtr-miR-22-5p MIMAT0003671 Xenopus tropicalis miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>dre-miR-22a-5p MIMAT0031942 Danio rerio miR-22a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>rno-miR-22-5p MIMAT0003152 Rattus norvegicus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>mmu-miR-22-5p MIMAT0004629 Mus musculus miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
>hsa-miR-22-5p MIMAT0004495 Homo sapiens miR-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaac 7
|||||||
Sbjct: 8 gaagaac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 150
Number of extensions: 125
Number of successful extensions: 93
Number of sequences better than 100.0: 23
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
