BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m01-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6631-5p MIMAT0025727 Gallus gallus miR-6631-5p 16 6.9
osa-miR2930 MIMAT0014061 Oryza sativa miR2930 16 6.9
osa-miR2097-3p MIMAT0010059 Oryza sativa miR2097-3p 16 6.9
mcmv-miR-m01-2-5p MIMAT0005534 Mouse cytomegalovirus miR-m01-2-5p 16 6.9
gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672 14 27
gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c 14 27
ptc-miR7817b MIMAT0030379 Populus trichocarpa miR7817b 14 27
mdm-miR169f MIMAT0026068 Malus domestica miR169f 14 27
mdm-miR169e MIMAT0026067 Malus domestica miR169e 14 27
hsa-miR-6809-3p MIMAT0027519 Homo sapiens miR-6809-3p 14 27
hsa-miR-6515-3p MIMAT0025487 Homo sapiens miR-6515-3p 14 27
ame-miR-6001-3p MIMAT0023542 Apis mellifera miR-6001-3p 14 27
gma-miR4413b MIMAT0021675 Glycine max miR4413b 14 27
mtr-miR5227 MIMAT0021186 Medicago truncatula miR5227 14 27
bdi-miR529-5p MIMAT0020754 Brachypodium distachyon miR529-5p 14 27
hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p 14 27
far-miR529 MIMAT0018373 Festuca arundinacea miR529 14 27
gma-miR4413a MIMAT0018338 Glycine max miR4413a 14 27
hsa-miR-3925-5p MIMAT0018200 Homo sapiens miR-3925-5p 14 27
zma-miR529-5p MIMAT0014030 Zea mays miR529-5p 14 27
zma-miR395o-5p MIMAT0015347 Zea mays miR395o-5p 14 27
aqc-miR529 MIMAT0012592 Aquilegia caerulea miR529 14 27
ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g 14 27
ppt-miR529f MIMAT0005059 Physcomitrella patens miR529f 14 27
ppt-miR529e MIMAT0005058 Physcomitrella patens miR529e 14 27
ppt-miR529d MIMAT0005057 Physcomitrella patens miR529d 14 27
ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c 14 27
ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b 14 27
ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a 14 27
osa-miR529b MIMAT0005015 Oryza sativa miR529b 14 27
>gga-miR-6631-5p MIMAT0025727 Gallus gallus miR-6631-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaagagaa 8
||||||||
Sbjct: 1 gaagagaa 8
>osa-miR2930 MIMAT0014061 Oryza sativa miR2930
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaagagaa 8
||||||||
Sbjct: 8 gaagagaa 1
>osa-miR2097-3p MIMAT0010059 Oryza sativa miR2097-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaagagaa 8
||||||||
Sbjct: 8 gaagagaa 1
>mcmv-miR-m01-2-5p MIMAT0005534 Mouse cytomegalovirus
miR-m01-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaagagaa 8
||||||||
Sbjct: 1 gaagagaa 8
>gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagaa 8
|||||||
Sbjct: 1 aagagaa 7
>gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagaa 8
|||||||
Sbjct: 1 aagagaa 7
>ptc-miR7817b MIMAT0030379 Populus trichocarpa miR7817b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaga 7
|||||||
Sbjct: 7 gaagaga 1
>mdm-miR169f MIMAT0026068 Malus domestica miR169f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>mdm-miR169e MIMAT0026067 Malus domestica miR169e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>hsa-miR-6809-3p MIMAT0027519 Homo sapiens miR-6809-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagaa 8
|||||||
Sbjct: 8 aagagaa 2
>hsa-miR-6515-3p MIMAT0025487 Homo sapiens miR-6515-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagaga 7
|||||||
Sbjct: 7 gaagaga 1
>ame-miR-6001-3p MIMAT0023542 Apis mellifera miR-6001-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagaa 8
|||||||
Sbjct: 7 aagagaa 1
>gma-miR4413b MIMAT0021675 Glycine max miR4413b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagaa 8
|||||||
Sbjct: 2 aagagaa 8
>mtr-miR5227 MIMAT0021186 Medicago truncatula miR5227
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>bdi-miR529-5p MIMAT0020754 Brachypodium distachyon miR529-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagaa 8
|||||||
Sbjct: 7 aagagaa 1
>far-miR529 MIMAT0018373 Festuca arundinacea miR529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>gma-miR4413a MIMAT0018338 Glycine max miR4413a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagaa 8
|||||||
Sbjct: 1 aagagaa 7
>hsa-miR-3925-5p MIMAT0018200 Homo sapiens miR-3925-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagaa 8
|||||||
Sbjct: 1 aagagaa 7
>zma-miR529-5p MIMAT0014030 Zea mays miR529-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>zma-miR395o-5p MIMAT0015347 Zea mays miR395o-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagaa 8
|||||||
Sbjct: 8 aagagaa 2
>aqc-miR529 MIMAT0012592 Aquilegia caerulea miR529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529f MIMAT0005059 Physcomitrella patens miR529f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529e MIMAT0005058 Physcomitrella patens miR529e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529d MIMAT0005057 Physcomitrella patens miR529d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
>osa-miR529b MIMAT0005015 Oryza sativa miR529b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagaga 7
|||||||
Sbjct: 2 gaagaga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 206
Number of extensions: 172
Number of successful extensions: 149
Number of sequences better than 100.0: 30
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 30
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
