BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p 14 27
eca-miR-9019 MIMAT0034560 Equus caballus miR-9019 14 27
tca-miR-3859-3p MIMAT0018791 Tribolium castaneum miR-3859-3p 14 27
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236 14 27
aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1 14 27
aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p 14 27
tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988 14 27
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b 14 27
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a 14 27
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236 14 27
mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p 14 27
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p 14 27
hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p 14 27
>chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 8 gaagagg 2
>eca-miR-9019 MIMAT0034560 Equus caballus miR-9019
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagagg 7
|||||||
Sbjct: 2 gaagagg 8
>tca-miR-3859-3p MIMAT0018791 Tribolium castaneum miR-3859-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagagg 7
|||||||
Sbjct: 1 gaagagg 7
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagagg 7
|||||||
Sbjct: 2 gaagagg 8
>aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagagg 7
|||||||
Sbjct: 2 gaagagg 8
>tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 7 gaagagg 1
>hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagagg 7
|||||||
Sbjct: 8 gaagagg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 142
Number of extensions: 129
Number of successful extensions: 86
Number of sequences better than 100.0: 13
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
