BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-10
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6816-3p MIMAT0027533 Homo sapiens miR-6816-3p 16 6.9
dvi-miR-9549-3p MIMAT0035643 Drosophila virilis miR-9549-3p 14 27
gsa-miR-71c-5p MIMAT0035320 Gyrodactylus salaris miR-71c-5p 14 27
eca-miR-9095 MIMAT0034641 Equus caballus miR-9095 14 27
hsa-miR-8080 MIMAT0031007 Homo sapiens miR-8080 14 27
mdo-miR-7386h-3p MIMAT0028841 Monodelphis domestica miR-7386h-3p 14 27
mmu-miR-7117-3p MIMAT0028132 Mus musculus miR-7117-3p 14 27
mmu-miR-6962-5p MIMAT0027824 Mus musculus miR-6962-5p 14 27
mmu-miR-6948-3p MIMAT0027797 Mus musculus miR-6948-3p 14 27
bta-miR-2285q MIMAT0025574 Bos taurus miR-2285q 14 27
cin-miR-4075-5p MIMAT0016638 Ciona intestinalis miR-4075-5p 14 27
aly-miR844-5p MIMAT0017629 Arabidopsis lyrata miR844-5p 14 27
cre-miR1160.3 MIMAT0005412 Chlamydomonas reinhardtii miR1160.3 14 27
mdv2-miR-M17-5p MIMAT0004456 Mareks disease miR-M17-5p 14 27
>hsa-miR-6816-3p MIMAT0027533 Homo sapiens miR-6816-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaaggacc 8
||||||||
Sbjct: 1 gaaggacc 8
>dvi-miR-9549-3p MIMAT0035643 Drosophila virilis miR-9549-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggacc 8
|||||||
Sbjct: 1 aaggacc 7
>gsa-miR-71c-5p MIMAT0035320 Gyrodactylus salaris miR-71c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaggac 7
|||||||
Sbjct: 1 gaaggac 7
>eca-miR-9095 MIMAT0034641 Equus caballus miR-9095
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaggac 7
|||||||
Sbjct: 2 gaaggac 8
>hsa-miR-8080 MIMAT0031007 Homo sapiens miR-8080
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaggac 7
|||||||
Sbjct: 1 gaaggac 7
>mdo-miR-7386h-3p MIMAT0028841 Monodelphis domestica
miR-7386h-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggacc 8
|||||||
Sbjct: 2 aaggacc 8
>mmu-miR-7117-3p MIMAT0028132 Mus musculus miR-7117-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaggac 7
|||||||
Sbjct: 8 gaaggac 2
>mmu-miR-6962-5p MIMAT0027824 Mus musculus miR-6962-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggacc 8
|||||||
Sbjct: 1 aaggacc 7
>mmu-miR-6948-3p MIMAT0027797 Mus musculus miR-6948-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaggac 7
|||||||
Sbjct: 8 gaaggac 2
>bta-miR-2285q MIMAT0025574 Bos taurus miR-2285q
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggacc 8
|||||||
Sbjct: 1 aaggacc 7
>cin-miR-4075-5p MIMAT0016638 Ciona intestinalis miR-4075-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaggacc 8
|||||||
Sbjct: 7 aaggacc 1
>aly-miR844-5p MIMAT0017629 Arabidopsis lyrata miR844-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaggac 7
|||||||
Sbjct: 2 gaaggac 8
>cre-miR1160.3 MIMAT0005412 Chlamydomonas reinhardtii miR1160.3
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggacc 8
|||||||
Sbjct: 1 aaggacc 7
>mdv2-miR-M17-5p MIMAT0004456 Mareks disease miR-M17-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaggac 7
|||||||
Sbjct: 8 gaaggac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 149
Number of extensions: 134
Number of successful extensions: 118
Number of sequences better than 100.0: 14
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
