BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6549-5p MIMAT0025603 Gallus gallus miR-6549-5p 14 20
hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p 14 20
hsa-miR-3614-3p MIMAT0017993 Homo sapiens miR-3614-3p 14 20
iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2 14 20
bta-miR-449d MIMAT0011962 Bos taurus miR-449d 14 20
ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p 12 80
ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p 12 80
chi-miR-487a-5p MIMAT0036246 Capra hircus miR-487a-5p 12 80
eca-miR-8980 MIMAT0034517 Equus caballus miR-8980 12 80
atr-miR8577 MIMAT0033860 Amborella trichopoda miR8577 12 80
gga-miR-7444-5p MIMAT0029042 Gallus gallus miR-7444-5p 12 80
mml-miR-7184-3p MIMAT0028321 Macaca mulatta miR-7184-3p 12 80
mmu-miR-7073-3p MIMAT0028053 Mus musculus miR-7073-3p 12 80
hsa-miR-6880-3p MIMAT0027661 Homo sapiens miR-6880-3p 12 80
gga-miR-6558-3p MIMAT0025624 Gallus gallus miR-6558-3p 12 80
gga-miR-6556-5p MIMAT0025621 Gallus gallus miR-6556-5p 12 80
mmu-miR-6365 MIMAT0025109 Mus musculus miR-6365 12 80
mmu-miR-6348 MIMAT0025091 Mus musculus miR-6348 12 80
hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126 12 80
mtr-miR2111a-3p MIMAT0022240 Medicago truncatula miR2111a-3p 12 80
cel-miR-5548-5p MIMAT0022187 Caenorhabditis elegans miR-5548-5p 12 80
osa-miR5074 MIMAT0020559 Oryza sativa miR5074 12 80
hsa-miR-3714 MIMAT0018165 Homo sapiens miR-3714 12 80
ath-miR4228-5p MIMAT0017944 Arabidopsis thaliana miR4228-5p 12 80
aly-miR4228 MIMAT0017916 Arabidopsis lyrata miR4228 12 80
rno-miR-3557-5p MIMAT0017819 Rattus norvegicus miR-3557-5p 12 80
rno-miR-3542 MIMAT0017796 Rattus norvegicus miR-3542 12 80
ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p 12 80
ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p 12 80
bmo-miR-3419 MIMAT0015626 Bombyx mori miR-3419 12 80
rlcv-miR-rL1-28-5p MIMAT0019193 Rhesus lymphocryptovirus miR-rL1... 12 80
mtr-miR2111e-3p MIMAT0026927 Medicago truncatula miR2111e-3p 12 80
dme-miR-2498-5p MIMAT0012210 Drosophila melanogaster miR-2498-5p 12 80
bta-miR-2387 MIMAT0011939 Bos taurus miR-2387 12 80
cbr-miR-90b-5p MIMAT0011471 Caenorhabditis briggsae miR-90b-5p 12 80
sme-miR-2203-5p MIMAT0011419 Schmidtea mediterranea miR-2203-5p 12 80
bmo-miR-970-5p MIMAT0015294 Bombyx mori miR-970-5p 12 80
bta-miR-940 MIMAT0009386 Bos taurus miR-940 12 80
ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525 12 80
ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524 12 80
ppt-miR1037 MIMAT0005145 Physcomitrella patens miR1037 12 80
cel-miR-798 MIMAT0004233 Caenorhabditis elegans miR-798 12 80
sme-bantam-c-5p MIMAT0012086 Schmidtea mediterranea bantam-c-5p 12 80
hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p 12 80
hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p 12 80
rno-miR-320-5p MIMAT0017168 Rattus norvegicus miR-320-5p 12 80
mmu-miR-320-5p MIMAT0017057 Mus musculus miR-320-5p 12 80
>gga-miR-6549-5p MIMAT0025603 Gallus gallus miR-6549-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaggct 7
|||||||
Sbjct: 7 gaaggct 1
>hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaggct 7
|||||||
Sbjct: 7 gaaggct 1
>hsa-miR-3614-3p MIMAT0017993 Homo sapiens miR-3614-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaaggct 7
|||||||
Sbjct: 8 gaaggct 2
>iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaggct 7
|||||||
Sbjct: 2 gaaggct 8
>bta-miR-449d MIMAT0011962 Bos taurus miR-449d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaaggct 7
|||||||
Sbjct: 1 gaaggct 7
>ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>chi-miR-487a-5p MIMAT0036246 Capra hircus miR-487a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 6 aaggct 1
>eca-miR-8980 MIMAT0034517 Equus caballus miR-8980
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>atr-miR8577 MIMAT0033860 Amborella trichopoda miR8577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 3 aaggct 8
>gga-miR-7444-5p MIMAT0029042 Gallus gallus miR-7444-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 3 aaggct 8
>mml-miR-7184-3p MIMAT0028321 Macaca mulatta miR-7184-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>mmu-miR-7073-3p MIMAT0028053 Mus musculus miR-7073-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>hsa-miR-6880-3p MIMAT0027661 Homo sapiens miR-6880-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 8 gaaggc 3
>gga-miR-6558-3p MIMAT0025624 Gallus gallus miR-6558-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 8 gaaggc 3
>gga-miR-6556-5p MIMAT0025621 Gallus gallus miR-6556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 1 aaggct 6
>mmu-miR-6365 MIMAT0025109 Mus musculus miR-6365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>mmu-miR-6348 MIMAT0025091 Mus musculus miR-6348
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 3 gaaggc 8
>mtr-miR2111a-3p MIMAT0022240 Medicago truncatula miR2111a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 6 aaggct 1
>cel-miR-5548-5p MIMAT0022187 Caenorhabditis elegans miR-5548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 6 gaaggc 1
>osa-miR5074 MIMAT0020559 Oryza sativa miR5074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>hsa-miR-3714 MIMAT0018165 Homo sapiens miR-3714
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>ath-miR4228-5p MIMAT0017944 Arabidopsis thaliana miR4228-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>aly-miR4228 MIMAT0017916 Arabidopsis lyrata miR4228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>rno-miR-3557-5p MIMAT0017819 Rattus norvegicus miR-3557-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 6 gaaggc 1
>rno-miR-3542 MIMAT0017796 Rattus norvegicus miR-3542
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 1 aaggct 6
>ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>bmo-miR-3419 MIMAT0015626 Bombyx mori miR-3419
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>rlcv-miR-rL1-28-5p MIMAT0019193 Rhesus lymphocryptovirus
miR-rL1-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 3 gaaggc 8
>mtr-miR2111e-3p MIMAT0026927 Medicago truncatula miR2111e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 6 aaggct 1
>dme-miR-2498-5p MIMAT0012210 Drosophila melanogaster
miR-2498-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 3 aaggct 8
>bta-miR-2387 MIMAT0011939 Bos taurus miR-2387
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 3 gaaggc 8
>cbr-miR-90b-5p MIMAT0011471 Caenorhabditis briggsae miR-90b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 8 gaaggc 3
>sme-miR-2203-5p MIMAT0011419 Schmidtea mediterranea miR-2203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 3 gaaggc 8
>bmo-miR-970-5p MIMAT0015294 Bombyx mori miR-970-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 6 aaggct 1
>bta-miR-940 MIMAT0009386 Bos taurus miR-940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 1 aaggct 6
>ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>ppt-miR1037 MIMAT0005145 Physcomitrella patens miR1037
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 6 aaggct 1
>cel-miR-798 MIMAT0004233 Caenorhabditis elegans miR-798
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaggct 7
||||||
Sbjct: 8 aaggct 3
>sme-bantam-c-5p MIMAT0012086 Schmidtea mediterranea bantam-c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaggct 7
||||||
Sbjct: 1 aaggct 6
>hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaaggc 6
||||||
Sbjct: 1 gaaggc 6
>rno-miR-320-5p MIMAT0017168 Rattus norvegicus miR-320-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 6 gaaggc 1
>mmu-miR-320-5p MIMAT0017057 Mus musculus miR-320-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaaggc 6
||||||
Sbjct: 6 gaaggc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 67
Number of extensions: 62
Number of successful extensions: 47
Number of sequences better than 100.0: 47
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 47
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
