BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s30
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cbr-miR-74b-5p MIMAT0011501 Caenorhabditis briggsae miR-74b-5p 16 6.9
cel-miR-73-5p MIMAT0020319 Caenorhabditis elegans miR-73-5p 16 6.9
bta-miR-378d MIMAT0036972 Bos taurus miR-378d 14 27
efu-miR-9356 MIMAT0035149 Eptesicus fuscus miR-9356 14 27
efu-miR-9338 MIMAT0035101 Eptesicus fuscus miR-9338 14 27
hsa-miR-8058 MIMAT0030985 Homo sapiens miR-8058 14 27
mmu-miR-7647-3p MIMAT0029797 Mus musculus miR-7647-3p 14 27
mdo-miR-7263-3p MIMAT0028493 Monodelphis domestica miR-7263-3p 14 27
mml-miR-7204-5p MIMAT0028372 Macaca mulatta miR-7204-5p 14 27
gma-miR5779 MIMAT0023184 Glycine max miR5779 14 27
hsa-miR-5009-5p MIMAT0021041 Homo sapiens miR-5009-5p 14 27
osa-miR2873b MIMAT0019685 Oryza sativa miR2873b 14 27
mmu-miR-378b MIMAT0019348 Mus musculus miR-378b 14 27
ppy-miR-617 MIMAT0016059 Pongo pygmaeus miR-617 14 27
tgu-miR-2955-5p MIMAT0026957 Taeniopygia guttata miR-2955-5p 14 27
bta-miR-2340 MIMAT0011875 Bos taurus miR-2340 14 27
oan-miR-1422k-5p MIMAT0006895 Ornithorhynchus anatinus miR-1422k-5p 14 27
>cbr-miR-74b-5p MIMAT0011501 Caenorhabditis briggsae miR-74b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaagtcca 8
||||||||
Sbjct: 8 gaagtcca 1
>cel-miR-73-5p MIMAT0020319 Caenorhabditis elegans miR-73-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaagtcca 8
||||||||
Sbjct: 8 gaagtcca 1
>bta-miR-378d MIMAT0036972 Bos taurus miR-378d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>efu-miR-9356 MIMAT0035149 Eptesicus fuscus miR-9356
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>efu-miR-9338 MIMAT0035101 Eptesicus fuscus miR-9338
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaagtcc 7
|||||||
Sbjct: 2 gaagtcc 8
>hsa-miR-8058 MIMAT0030985 Homo sapiens miR-8058
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>mmu-miR-7647-3p MIMAT0029797 Mus musculus miR-7647-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcca 8
|||||||
Sbjct: 1 aagtcca 7
>mdo-miR-7263-3p MIMAT0028493 Monodelphis domestica miR-7263-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 7 aagtcca 1
>mml-miR-7204-5p MIMAT0028372 Macaca mulatta miR-7204-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>gma-miR5779 MIMAT0023184 Glycine max miR5779
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcca 8
|||||||
Sbjct: 2 aagtcca 8
>hsa-miR-5009-5p MIMAT0021041 Homo sapiens miR-5009-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>osa-miR2873b MIMAT0019685 Oryza sativa miR2873b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>mmu-miR-378b MIMAT0019348 Mus musculus miR-378b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcca 8
|||||||
Sbjct: 8 aagtcca 2
>ppy-miR-617 MIMAT0016059 Pongo pygmaeus miR-617
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagtcc 7
|||||||
Sbjct: 7 gaagtcc 1
>tgu-miR-2955-5p MIMAT0026957 Taeniopygia guttata miR-2955-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcca 8
|||||||
Sbjct: 1 aagtcca 7
>bta-miR-2340 MIMAT0011875 Bos taurus miR-2340
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaagtcc 7
|||||||
Sbjct: 7 gaagtcc 1
>oan-miR-1422k-5p MIMAT0006895 Ornithorhynchus anatinus
miR-1422k-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcca 8
|||||||
Sbjct: 1 aagtcca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 294
Number of extensions: 275
Number of successful extensions: 237
Number of sequences better than 100.0: 17
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
