BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s24
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cin-miR-4020b-3p MIMAT0016534 Ciona intestinalis miR-4020b-3p 16 6.9
chi-miR-660 MIMAT0036284 Capra hircus miR-660 14 27
hbr-miR482b MIMAT0035237 Hevea brasiliensis miR482b 14 27
efu-miR-660 MIMAT0035154 Eptesicus fuscus miR-660 14 27
sma-miR-8482-5p MIMAT0033685 Schistosoma mansoni miR-8482-5p 14 27
mmu-miR-7674-3p MIMAT0029857 Mus musculus miR-7674-3p 14 27
mmu-miR-6987-3p MIMAT0027877 Mus musculus miR-6987-3p 14 27
ppe-miR482c-5p MIMAT0027283 Prunus persica miR482c-5p 14 27
ppe-miR482b-5p MIMAT0031166 Prunus persica miR482b-5p 14 27
ggo-miR-660 MIMAT0024164 Gorilla gorilla miR-660 14 27
hsa-miR-4506 MIMAT0019042 Homo sapiens miR-4506 14 27
vvi-miR3633b-5p MIMAT0018041 Vitis vinifera miR3633b-5p 14 27
ppy-miR-1246 MIMAT0016171 Pongo pygmaeus miR-1246 14 27
ppy-miR-660 MIMAT0016092 Pongo pygmaeus miR-660 14 27
mmu-miR-3092-3p MIMAT0014906 Mus musculus miR-3092-3p 14 27
eca-miR-660 MIMAT0013241 Equus caballus miR-660 14 27
pvu-miR482-5p MIMAT0011172 Phaseolus vulgaris miR482-5p 14 27
ptr-miR-660 MIMAT0008308 Pan troglodytes miR-660 14 27
cfa-miR-660 MIMAT0006760 Canis familiaris miR-660 14 27
mml-miR-660-5p MIMAT0006499 Macaca mulatta miR-660-5p 14 27
bta-miR-660 MIMAT0004344 Bos taurus miR-660 14 27
hsa-miR-660-5p MIMAT0003338 Homo sapiens miR-660-5p 14 27
>cin-miR-4020b-3p MIMAT0016534 Ciona intestinalis miR-4020b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaatgggt 8
||||||||
Sbjct: 8 gaatgggt 1
>chi-miR-660 MIMAT0036284 Capra hircus miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>hbr-miR482b MIMAT0035237 Hevea brasiliensis miR482b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatggg 7
|||||||
Sbjct: 1 gaatggg 7
>efu-miR-660 MIMAT0035154 Eptesicus fuscus miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>sma-miR-8482-5p MIMAT0033685 Schistosoma mansoni miR-8482-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgggt 8
|||||||
Sbjct: 1 aatgggt 7
>mmu-miR-7674-3p MIMAT0029857 Mus musculus miR-7674-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaatggg 7
|||||||
Sbjct: 8 gaatggg 2
>mmu-miR-6987-3p MIMAT0027877 Mus musculus miR-6987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>ppe-miR482c-5p MIMAT0027283 Prunus persica miR482c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatggg 7
|||||||
Sbjct: 2 gaatggg 8
>ppe-miR482b-5p MIMAT0031166 Prunus persica miR482b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatggg 7
|||||||
Sbjct: 2 gaatggg 8
>ggo-miR-660 MIMAT0024164 Gorilla gorilla miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>hsa-miR-4506 MIMAT0019042 Homo sapiens miR-4506
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgggt 8
|||||||
Sbjct: 2 aatgggt 8
>vvi-miR3633b-5p MIMAT0018041 Vitis vinifera miR3633b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatggg 7
|||||||
Sbjct: 2 gaatggg 8
>ppy-miR-1246 MIMAT0016171 Pongo pygmaeus miR-1246
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgggt 8
|||||||
Sbjct: 1 aatgggt 7
>ppy-miR-660 MIMAT0016092 Pongo pygmaeus miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>mmu-miR-3092-3p MIMAT0014906 Mus musculus miR-3092-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatggg 7
|||||||
Sbjct: 1 gaatggg 7
>eca-miR-660 MIMAT0013241 Equus caballus miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>pvu-miR482-5p MIMAT0011172 Phaseolus vulgaris miR482-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatggg 7
|||||||
Sbjct: 2 gaatggg 8
>ptr-miR-660 MIMAT0008308 Pan troglodytes miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>cfa-miR-660 MIMAT0006760 Canis familiaris miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>mml-miR-660-5p MIMAT0006499 Macaca mulatta miR-660-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>bta-miR-660 MIMAT0004344 Bos taurus miR-660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
>hsa-miR-660-5p MIMAT0003338 Homo sapiens miR-660-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggt 8
|||||||
Sbjct: 8 aatgggt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 129
Number of extensions: 106
Number of successful extensions: 85
Number of sequences better than 100.0: 22
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
