BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d6-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294 14 20
dev-miR-D6-5p MIMAT0028175 Duck enteritis miR-D6-5p 14 20
mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p 14 20
ssc-miR-9855-5p MIMAT0037074 Sus scrofa miR-9855-5p 12 80
ssc-miR-9854-5p MIMAT0037073 Sus scrofa miR-9854-5p 12 80
ssc-miR-9831-3p MIMAT0037049 Sus scrofa miR-9831-3p 12 80
oha-miR-599 MIMAT0036944 Ophiophagus hannah miR-599 12 80
nve-miR-9445 MIMAT0035406 Nematostella vectensis miR-9445 12 80
dme-miR-9384-3p MIMAT0035232 Drosophila melanogaster miR-9384-3p 12 80
efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f 12 80
bdi-miR7742-3p MIMAT0030225 Brachypodium distachyon miR7742-3p 12 80
lva-miR-2004-3p MIMAT0032225 Lytechinus variegatus miR-2004-3p 12 80
pmi-miR-2004-3p MIMAT0032177 Patiria miniata miR-2004-3p 12 80
oan-miR-7421-5p MIMAT0028992 Ornithorhynchus anatinus miR-7421-5p 12 80
mmu-miR-7212-3p MIMAT0028393 Mus musculus miR-7212-3p 12 80
sbi-miR6234b-5p MIMAT0026452 Sorghum bicolor miR6234b-5p 12 80
sbi-miR6234a-5p MIMAT0026450 Sorghum bicolor miR6234a-5p 12 80
mmu-miR-6995-3p MIMAT0027893 Mus musculus miR-6995-3p 12 80
hsa-miR-6867-5p MIMAT0027634 Homo sapiens miR-6867-5p 12 80
ppe-miR6277 MIMAT0027306 Prunus persica miR6277 12 80
tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p 12 80
hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669 12 80
hsa-miR-4643 MIMAT0019703 Homo sapiens miR-4643 12 80
pma-miR-4571-3p MIMAT0019604 Petromyzon marinus miR-4571-3p 12 80
hsa-miR-3941 MIMAT0018357 Homo sapiens miR-3941 12 80
tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p 12 80
tca-miR-3853-5p MIMAT0018762 Tribolium castaneum miR-3853-5p 12 80
hsa-miR-3657 MIMAT0018077 Homo sapiens miR-3657 12 80
hsa-miR-3650 MIMAT0018070 Homo sapiens miR-3650 12 80
cin-miR-4202-5p MIMAT0016822 Ciona intestinalis miR-4202-5p 12 80
cin-miR-4181-5p MIMAT0016794 Ciona intestinalis miR-4181-5p 12 80
rno-miR-3576 MIMAT0017862 Rattus norvegicus miR-3576 12 80
rno-miR-3561-5p MIMAT0017830 Rattus norvegicus miR-3561-5p 12 80
rno-miR-466d MIMAT0017824 Rattus norvegicus miR-466d 12 80
ppy-miR-599 MIMAT0016041 Pongo pygmaeus miR-599 12 80
ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597 12 80
mmu-miR-466n-5p MIMAT0014893 Mus musculus miR-466n-5p 12 80
zma-miR164e-3p MIMAT0015317 Zea mays miR164e-3p 12 80
rno-miR-592 MIMAT0012834 Rattus norvegicus miR-592 12 80
mdo-miR-599-3p MIMAT0012765 Monodelphis domestica miR-599-3p 12 80
dps-miR-2559-5p MIMAT0012380 Drosophila pseudoobscura miR-2559-5p 12 80
dme-miR-2493-3p MIMAT0012201 Drosophila melanogaster miR-2493-3p 12 80
ppt-miR2082 MIMAT0010021 Physcomitrella patens miR2082 12 80
cfa-miR-599 MIMAT0009919 Canis familiaris miR-599 12 80
cfa-miR-592 MIMAT0009918 Canis familiaris miR-592 12 80
spu-miR-2004 MIMAT0009745 Strongylocentrotus purpuratus miR-2004 12 80
mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970 12 80
bta-miR-599 MIMAT0009354 Bos taurus miR-599 12 80
bta-miR-592 MIMAT0009353 Bos taurus miR-592 12 80
ptr-miR-599 MIMAT0008268 Pan troglodytes miR-599 12 80
ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597 12 80
osa-miR1850.2 MIMAT0009210 Oryza sativa miR1850.2 12 80
mml-miR-599-3p MIMAT0006456 Macaca mulatta miR-599-3p 12 80
mml-miR-597 MIMAT0006454 Macaca mulatta miR-597 12 80
mml-miR-147a MIMAT0006206 Macaca mulatta miR-147a 12 80
mmu-miR-466k MIMAT0005845 Mus musculus miR-466k 12 80
mmu-miR-466f MIMAT0005844 Mus musculus miR-466f 12 80
mmu-miR-466i-3p MIMAT0005834 Mus musculus miR-466i-3p 12 80
mmu-miR-466i-5p MIMAT0017325 Mus musculus miR-466i-5p 12 80
mmu-miR-466l-5p MIMAT0017322 Mus musculus miR-466l-5p 12 80
rno-miR-672-3p MIMAT0017312 Rattus norvegicus miR-672-3p 12 80
hsa-miR-216b-3p MIMAT0026721 Homo sapiens miR-216b-3p 12 80
mmu-miR-466d-5p MIMAT0004930 Mus musculus miR-466d-5p 12 80
mmu-miR-672-3p MIMAT0017241 Mus musculus miR-672-3p 12 80
mmu-miR-592-5p MIMAT0003730 Mus musculus miR-592-5p 12 80
hsa-miR-599 MIMAT0003267 Homo sapiens miR-599 12 80
hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p 12 80
ppa-miR-147 MIMAT0002478 Pan paniscus miR-147 12 80
mne-miR-147 MIMAT0002477 Macaca nemestrina miR-147 12 80
sla-miR-147 MIMAT0002476 Saguinus labiatus miR-147 12 80
ppy-miR-147a MIMAT0002475 Pongo pygmaeus miR-147a 12 80
ptr-miR-147a MIMAT0002474 Pan troglodytes miR-147a 12 80
hsa-miR-147a MIMAT0000251 Homo sapiens miR-147a 12 80
>efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacacac 7
|||||||
Sbjct: 7 gacacac 1
>dev-miR-D6-5p MIMAT0028175 Duck enteritis miR-D6-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacacac 7
|||||||
Sbjct: 2 gacacac 8
>mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacacac 7
|||||||
Sbjct: 8 gacacac 2
>ssc-miR-9855-5p MIMAT0037074 Sus scrofa miR-9855-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>ssc-miR-9854-5p MIMAT0037073 Sus scrofa miR-9854-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>ssc-miR-9831-3p MIMAT0037049 Sus scrofa miR-9831-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>oha-miR-599 MIMAT0036944 Ophiophagus hannah miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>nve-miR-9445 MIMAT0035406 Nematostella vectensis miR-9445
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>dme-miR-9384-3p MIMAT0035232 Drosophila melanogaster
miR-9384-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>bdi-miR7742-3p MIMAT0030225 Brachypodium distachyon miR7742-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>lva-miR-2004-3p MIMAT0032225 Lytechinus variegatus miR-2004-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 3 acacac 8
>pmi-miR-2004-3p MIMAT0032177 Patiria miniata miR-2004-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 3 acacac 8
>oan-miR-7421-5p MIMAT0028992 Ornithorhynchus anatinus
miR-7421-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>mmu-miR-7212-3p MIMAT0028393 Mus musculus miR-7212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 3 acacac 8
>sbi-miR6234b-5p MIMAT0026452 Sorghum bicolor miR6234b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>sbi-miR6234a-5p MIMAT0026450 Sorghum bicolor miR6234a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>mmu-miR-6995-3p MIMAT0027893 Mus musculus miR-6995-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>hsa-miR-6867-5p MIMAT0027634 Homo sapiens miR-6867-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>ppe-miR6277 MIMAT0027306 Prunus persica miR6277
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacaca 6
||||||
Sbjct: 1 gacaca 6
>hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>hsa-miR-4643 MIMAT0019703 Homo sapiens miR-4643
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacaca 6
||||||
Sbjct: 1 gacaca 6
>pma-miR-4571-3p MIMAT0019604 Petromyzon marinus miR-4571-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>hsa-miR-3941 MIMAT0018357 Homo sapiens miR-3941
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 3 acacac 8
>tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacaca 6
||||||
Sbjct: 3 gacaca 8
>tca-miR-3853-5p MIMAT0018762 Tribolium castaneum miR-3853-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>hsa-miR-3657 MIMAT0018077 Homo sapiens miR-3657
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>hsa-miR-3650 MIMAT0018070 Homo sapiens miR-3650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>cin-miR-4202-5p MIMAT0016822 Ciona intestinalis miR-4202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>cin-miR-4181-5p MIMAT0016794 Ciona intestinalis miR-4181-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>rno-miR-3576 MIMAT0017862 Rattus norvegicus miR-3576
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 1 acacac 6
>rno-miR-3561-5p MIMAT0017830 Rattus norvegicus miR-3561-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>rno-miR-466d MIMAT0017824 Rattus norvegicus miR-466d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>ppy-miR-599 MIMAT0016041 Pongo pygmaeus miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>mmu-miR-466n-5p MIMAT0014893 Mus musculus miR-466n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>zma-miR164e-3p MIMAT0015317 Zea mays miR164e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>rno-miR-592 MIMAT0012834 Rattus norvegicus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>mdo-miR-599-3p MIMAT0012765 Monodelphis domestica miR-599-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>dps-miR-2559-5p MIMAT0012380 Drosophila pseudoobscura
miR-2559-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>dme-miR-2493-3p MIMAT0012201 Drosophila melanogaster
miR-2493-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>ppt-miR2082 MIMAT0010021 Physcomitrella patens miR2082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>cfa-miR-599 MIMAT0009919 Canis familiaris miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>cfa-miR-592 MIMAT0009918 Canis familiaris miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>spu-miR-2004 MIMAT0009745 Strongylocentrotus purpuratus
miR-2004
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 3 acacac 8
>mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>bta-miR-599 MIMAT0009354 Bos taurus miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>bta-miR-592 MIMAT0009353 Bos taurus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>ptr-miR-599 MIMAT0008268 Pan troglodytes miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>osa-miR1850.2 MIMAT0009210 Oryza sativa miR1850.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>mml-miR-599-3p MIMAT0006456 Macaca mulatta miR-599-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>mml-miR-597 MIMAT0006454 Macaca mulatta miR-597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>mml-miR-147a MIMAT0006206 Macaca mulatta miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>mmu-miR-466k MIMAT0005845 Mus musculus miR-466k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>mmu-miR-466f MIMAT0005844 Mus musculus miR-466f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>mmu-miR-466i-3p MIMAT0005834 Mus musculus miR-466i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 3 acacac 8
>mmu-miR-466i-5p MIMAT0017325 Mus musculus miR-466i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>mmu-miR-466l-5p MIMAT0017322 Mus musculus miR-466l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 8 acacac 3
>rno-miR-672-3p MIMAT0017312 Rattus norvegicus miR-672-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 1 acacac 6
>hsa-miR-216b-3p MIMAT0026721 Homo sapiens miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 1 acacac 6
>mmu-miR-466d-5p MIMAT0004930 Mus musculus miR-466d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 7 acacac 2
>mmu-miR-672-3p MIMAT0017241 Mus musculus miR-672-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacac 7
||||||
Sbjct: 1 acacac 6
>mmu-miR-592-5p MIMAT0003730 Mus musculus miR-592-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>hsa-miR-599 MIMAT0003267 Homo sapiens miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 8 gacaca 3
>hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacaca 6
||||||
Sbjct: 6 gacaca 1
>ppa-miR-147 MIMAT0002478 Pan paniscus miR-147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>mne-miR-147 MIMAT0002477 Macaca nemestrina miR-147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>sla-miR-147 MIMAT0002476 Saguinus labiatus miR-147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>ppy-miR-147a MIMAT0002475 Pongo pygmaeus miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>ptr-miR-147a MIMAT0002474 Pan troglodytes miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
>hsa-miR-147a MIMAT0000251 Homo sapiens miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacac 7
||||||
Sbjct: 6 acacac 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 125
Number of extensions: 122
Number of successful extensions: 73
Number of sequences better than 100.0: 73
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 73
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)