BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r111.2-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
zma-miR1432-3p MIMAT0015366 Zea mays miR1432-3p 14 20
ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p 12 80
efu-miR-9314 MIMAT0034989 Eptesicus fuscus miR-9314 12 80
sma-miR-8413-3p MIMAT0033531 Schistosoma mansoni miR-8413-3p 12 80
ppc-miR-8316-3p MIMAT0033170 Pristionchus pacificus miR-8316-3p 12 80
prd-miR-7932-3p MIMAT0030717 Panagrellus redivivus miR-7932-3p 12 80
rgl-miR7804-5p MIMAT0032245 Rehmannia glutinosa miR7804-5p 12 80
mdo-miR-1544b-5p MIMAT0028744 Monodelphis domestica miR-1544b-5p 12 80
hsa-miR-6865-3p MIMAT0027631 Homo sapiens miR-6865-3p 12 80
hsa-miR-6772-5p MIMAT0027444 Homo sapiens miR-6772-5p 12 80
hsa-miR-6747-5p MIMAT0027394 Homo sapiens miR-6747-5p 12 80
gga-miR-6674-3p MIMAT0025776 Gallus gallus miR-6674-3p 12 80
gga-miR-6652-5p MIMAT0025752 Gallus gallus miR-6652-5p 12 80
tgu-miR-1789 MIMAT0025408 Taeniopygia guttata miR-1789 12 80
tur-miR-5728-2-5p MIMAT0026469 Tetranychus urticae miR-5728-2-5p 12 80
gma-miR5676 MIMAT0022462 Glycine max miR5676 12 80
asu-miR-81b-5p MIMAT0021419 Ascaris suum miR-81b-5p 12 80
cin-miR-4046-5p MIMAT0016581 Ciona intestinalis miR-4046-5p 12 80
tgu-miR-2986 MIMAT0014496 Taeniopygia guttata miR-2986 12 80
bmo-miR-2780b MIMAT0013732 Bombyx mori miR-2780b 12 80
bmo-miR-2780a-5p MIMAT0013669 Bombyx mori miR-2780a-5p 12 80
dps-miR-307b MIMAT0012281 Drosophila pseudoobscura miR-307b 12 80
dme-miR-307b-3p MIMAT0012195 Drosophila melanogaster miR-307b-3p 12 80
bta-miR-2438 MIMAT0012012 Bos taurus miR-2438 12 80
mmu-miR-2136 MIMAT0011212 Mus musculus miR-2136 12 80
gga-miR-1789 MIMAT0007702 Gallus gallus miR-1789 12 80
gga-miR-1708 MIMAT0007601 Gallus gallus miR-1708 12 80
osa-miR1432-3p MIMAT0022950 Oryza sativa miR1432-3p 12 80
cel-miR-42-5p MIMAT0015095 Caenorhabditis elegans miR-42-5p 12 80
>zma-miR1432-3p MIMAT0015366 Zea mays miR1432-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacaccc 7
|||||||
Sbjct: 7 gacaccc 1
>ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacacc 6
||||||
Sbjct: 8 gacacc 3
>efu-miR-9314 MIMAT0034989 Eptesicus fuscus miR-9314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaccc 7
||||||
Sbjct: 1 acaccc 6
>sma-miR-8413-3p MIMAT0033531 Schistosoma mansoni miR-8413-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacacc 6
||||||
Sbjct: 6 gacacc 1
>ppc-miR-8316-3p MIMAT0033170 Pristionchus pacificus miR-8316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacacc 6
||||||
Sbjct: 8 gacacc 3
>prd-miR-7932-3p MIMAT0030717 Panagrellus redivivus miR-7932-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>rgl-miR7804-5p MIMAT0032245 Rehmannia glutinosa miR7804-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>mdo-miR-1544b-5p MIMAT0028744 Monodelphis domestica
miR-1544b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaccc 7
||||||
Sbjct: 1 acaccc 6
>hsa-miR-6865-3p MIMAT0027631 Homo sapiens miR-6865-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaccc 7
||||||
Sbjct: 1 acaccc 6
>hsa-miR-6772-5p MIMAT0027444 Homo sapiens miR-6772-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 7 acaccc 2
>hsa-miR-6747-5p MIMAT0027394 Homo sapiens miR-6747-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>gga-miR-6674-3p MIMAT0025776 Gallus gallus miR-6674-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacacc 6
||||||
Sbjct: 8 gacacc 3
>gga-miR-6652-5p MIMAT0025752 Gallus gallus miR-6652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 7 acaccc 2
>tgu-miR-1789 MIMAT0025408 Taeniopygia guttata miR-1789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 7 acaccc 2
>tur-miR-5728-2-5p MIMAT0026469 Tetranychus urticae
miR-5728-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaccc 7
||||||
Sbjct: 1 acaccc 6
>gma-miR5676 MIMAT0022462 Glycine max miR5676
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacacc 6
||||||
Sbjct: 3 gacacc 8
>asu-miR-81b-5p MIMAT0021419 Ascaris suum miR-81b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>cin-miR-4046-5p MIMAT0016581 Ciona intestinalis miR-4046-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>tgu-miR-2986 MIMAT0014496 Taeniopygia guttata miR-2986
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacacc 6
||||||
Sbjct: 3 gacacc 8
>bmo-miR-2780b MIMAT0013732 Bombyx mori miR-2780b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>bmo-miR-2780a-5p MIMAT0013669 Bombyx mori miR-2780a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>dps-miR-307b MIMAT0012281 Drosophila pseudoobscura miR-307b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaccc 7
||||||
Sbjct: 3 acaccc 8
>dme-miR-307b-3p MIMAT0012195 Drosophila melanogaster
miR-307b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaccc 7
||||||
Sbjct: 3 acaccc 8
>bta-miR-2438 MIMAT0012012 Bos taurus miR-2438
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>mmu-miR-2136 MIMAT0011212 Mus musculus miR-2136
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>gga-miR-1789 MIMAT0007702 Gallus gallus miR-1789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 7 acaccc 2
>gga-miR-1708 MIMAT0007601 Gallus gallus miR-1708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
>osa-miR1432-3p MIMAT0022950 Oryza sativa miR1432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacacc 6
||||||
Sbjct: 8 gacacc 3
>cel-miR-42-5p MIMAT0015095 Caenorhabditis elegans miR-42-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaccc 7
||||||
Sbjct: 8 acaccc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 43
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
