BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-11-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-7465-3p MIMAT0029085 Gallus gallus miR-7465-3p 14 20
aly-miR398a-5p MIMAT0017565 Arabidopsis lyrata miR398a-5p 14 20
bol-miR398a-5p MIMAT0010173 Brassica oleracea miR398a-5p 14 20
rlcv-miR-rL1-11-3p MIMAT0003440 Rhesus lymphocryptovirus miR-rL1... 14 20
ame-miR-9889 MIMAT0037294 Apis mellifera miR-9889 12 80
ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p 12 80
oha-miR-122-5p MIMAT0036666 Ophiophagus hannah miR-122-5p 12 80
tch-miR-122-5p MIMAT0036530 Tupaia chinensis miR-122-5p 12 80
chi-miR-122 MIMAT0035918 Capra hircus miR-122 12 80
cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861 12 80
str-miR-58-5p MIMAT0033464 Strongyloides ratti miR-58-5p 12 80
ppc-miR-8364j-3p MIMAT0033027 Pristionchus pacificus miR-8364j-3p 12 80
cel-miR-8194-3p MIMAT0032802 Caenorhabditis elegans miR-8194-3p 12 80
ssa-miR-122-5p MIMAT0032301 Salmo salar miR-122-5p 12 80
stu-miR398b-5p MIMAT0031333 Solanum tuberosum miR398b-5p 12 80
cbn-miR-7630 MIMAT0029672 Caenorhabditis brenneri miR-7630 12 80
ipu-miR-122 MIMAT0029395 Ictalurus punctatus miR-122 12 80
ccr-miR-122 MIMAT0026203 Cyprinus carpio miR-122 12 80
mmu-miR-7089-3p MIMAT0028085 Mus musculus miR-7089-3p 12 80
mmu-miR-6923-3p MIMAT0027747 Mus musculus miR-6923-3p 12 80
mmu-miR-6908-3p MIMAT0027717 Mus musculus miR-6908-3p 12 80
hsa-miR-6790-5p MIMAT0027480 Homo sapiens miR-6790-5p 12 80
hsa-miR-6733-3p MIMAT0027368 Homo sapiens miR-6733-3p 12 80
gga-miR-6576-3p MIMAT0025660 Gallus gallus miR-6576-3p 12 80
pol-miR-122-5p MIMAT0025428 Paralichthys olivaceus miR-122-5p 12 80
mmu-miR-6401 MIMAT0025153 Mus musculus miR-6401 12 80
hvu-miR6182 MIMAT0024806 Hordeum vulgare miR6182 12 80
nta-miR6151i MIMAT0024750 Nicotiana tabacum miR6151i 12 80
nta-miR6151h MIMAT0024749 Nicotiana tabacum miR6151h 12 80
nta-miR6151g MIMAT0024748 Nicotiana tabacum miR6151g 12 80
nta-miR6151f MIMAT0024747 Nicotiana tabacum miR6151f 12 80
bta-miR-574 MIMAT0024577 Bos taurus miR-574 12 80
ggo-miR-122 MIMAT0024179 Gorilla gorilla miR-122 12 80
cgr-miR-122 MIMAT0023739 Cricetulus griseus miR-122 12 80
hco-miR-5886b MIMAT0023462 Haemonchus contortus miR-5886b 12 80
aca-miR-122-5p MIMAT0021723 Anolis carolinensis miR-122-5p 12 80
bdi-miR5180a MIMAT0020729 Brachypodium distachyon miR5180a 12 80
bdi-miR5180b MIMAT0020713 Brachypodium distachyon miR5180b 12 80
hsa-miR-4704-5p MIMAT0019803 Homo sapiens miR-4704-5p 12 80
hsa-miR-4658 MIMAT0019725 Homo sapiens miR-4658 12 80
gma-miR4379 MIMAT0018285 Glycine max miR4379 12 80
hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659 12 80
dme-miR-3641-5p MIMAT0018055 Drosophila melanogaster miR-3641-5p 12 80
hsa-miR-4280 MIMAT0016911 Homo sapiens miR-4280 12 80
ppy-miR-122 MIMAT0015746 Pongo pygmaeus miR-122 12 80
mmu-miR-3095-3p MIMAT0014912 Mus musculus miR-3095-3p 12 80
tgu-miR-122-5p MIMAT0014529 Taeniopygia guttata miR-122-5p 12 80
eca-miR-122 MIMAT0012995 Equus caballus miR-122 12 80
dps-miR-2555-5p MIMAT0012372 Drosophila pseudoobscura miR-2555-5p 12 80
cel-miR-2209c-5p MIMAT0011433 Caenorhabditis elegans miR-2209c-5p 12 80
cel-miR-2209a-5p MIMAT0011431 Caenorhabditis elegans miR-2209a-5p 12 80
sme-miR-2155 MIMAT0011285 Schmidtea mediterranea miR-2155 12 80
ppt-miR1023e-5p MIMAT0010024 Physcomitrella patens miR1023e-5p 12 80
ptr-miR-122 MIMAT0007963 Pan troglodytes miR-122 12 80
cfa-miR-122 MIMAT0006619 Canis familiaris miR-122 12 80
mml-miR-122a-5p MIMAT0006180 Macaca mulatta miR-122a-5p 12 80
oan-miR-1352 MIMAT0006945 Ornithorhynchus anatinus miR-1352 12 80
oan-miR-122-5p MIMAT0006825 Ornithorhynchus anatinus miR-122-5p 12 80
ppt-miR1023b-5p MIMAT0005104 Physcomitrella patens miR1023b-5p 12 80
ppt-miR1023a-5p MIMAT0005102 Physcomitrella patens miR1023a-5p 12 80
mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p 12 80
mmu-miR-574-5p MIMAT0004893 Mus musculus miR-574-5p 12 80
mdo-miR-122-5p MIMAT0004101 Monodelphis domestica miR-122-5p 12 80
bta-miR-122 MIMAT0003849 Bos taurus miR-122 12 80
xtr-miR-122 MIMAT0003585 Xenopus tropicalis miR-122 12 80
hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p 12 80
tni-miR-122 MIMAT0002992 Tetraodon nigroviridis miR-122 12 80
fru-miR-122 MIMAT0002991 Fugu rubripes miR-122 12 80
ssc-miR-122 MIMAT0002119 Sus scrofa miR-122 12 80
dre-miR-122 MIMAT0001818 Danio rerio miR-122 12 80
osa-miR440 MIMAT0001599 Oryza sativa miR440 12 80
gga-miR-122-5p MIMAT0001190 Gallus gallus miR-122-5p 12 80
rno-miR-122-5p MIMAT0000827 Rattus norvegicus miR-122-5p 12 80
hsa-miR-122-5p MIMAT0000421 Homo sapiens miR-122-5p 12 80
cel-miR-239a-3p MIMAT0020334 Caenorhabditis elegans miR-239a-3p 12 80
mmu-miR-122-5p MIMAT0000246 Mus musculus miR-122-5p 12 80
>gga-miR-7465-3p MIMAT0029085 Gallus gallus miR-7465-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacactc 7
|||||||
Sbjct: 8 gacactc 2
>aly-miR398a-5p MIMAT0017565 Arabidopsis lyrata miR398a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacactc 7
|||||||
Sbjct: 8 gacactc 2
>bol-miR398a-5p MIMAT0010173 Brassica oleracea miR398a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacactc 7
|||||||
Sbjct: 8 gacactc 2
>rlcv-miR-rL1-11-3p MIMAT0003440 Rhesus lymphocryptovirus
miR-rL1-11-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacactc 7
|||||||
Sbjct: 2 gacactc 8
>ame-miR-9889 MIMAT0037294 Apis mellifera miR-9889
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 6 gacact 1
>ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>oha-miR-122-5p MIMAT0036666 Ophiophagus hannah miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>tch-miR-122-5p MIMAT0036530 Tupaia chinensis miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>chi-miR-122 MIMAT0035918 Capra hircus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 8 gacact 3
>str-miR-58-5p MIMAT0033464 Strongyloides ratti miR-58-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacact 6
||||||
Sbjct: 3 gacact 8
>ppc-miR-8364j-3p MIMAT0033027 Pristionchus pacificus
miR-8364j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cel-miR-8194-3p MIMAT0032802 Caenorhabditis elegans miR-8194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>ssa-miR-122-5p MIMAT0032301 Salmo salar miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>stu-miR398b-5p MIMAT0031333 Solanum tuberosum miR398b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>cbn-miR-7630 MIMAT0029672 Caenorhabditis brenneri miR-7630
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>ipu-miR-122 MIMAT0029395 Ictalurus punctatus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ccr-miR-122 MIMAT0026203 Cyprinus carpio miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mmu-miR-7089-3p MIMAT0028085 Mus musculus miR-7089-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 8 gacact 3
>mmu-miR-6923-3p MIMAT0027747 Mus musculus miR-6923-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>mmu-miR-6908-3p MIMAT0027717 Mus musculus miR-6908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>hsa-miR-6790-5p MIMAT0027480 Homo sapiens miR-6790-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-6733-3p MIMAT0027368 Homo sapiens miR-6733-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 8 gacact 3
>gga-miR-6576-3p MIMAT0025660 Gallus gallus miR-6576-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 6 gacact 1
>pol-miR-122-5p MIMAT0025428 Paralichthys olivaceus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mmu-miR-6401 MIMAT0025153 Mus musculus miR-6401
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>hvu-miR6182 MIMAT0024806 Hordeum vulgare miR6182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151i MIMAT0024750 Nicotiana tabacum miR6151i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151h MIMAT0024749 Nicotiana tabacum miR6151h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151g MIMAT0024748 Nicotiana tabacum miR6151g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151f MIMAT0024747 Nicotiana tabacum miR6151f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>bta-miR-574 MIMAT0024577 Bos taurus miR-574
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>ggo-miR-122 MIMAT0024179 Gorilla gorilla miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cgr-miR-122 MIMAT0023739 Cricetulus griseus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hco-miR-5886b MIMAT0023462 Haemonchus contortus miR-5886b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>aca-miR-122-5p MIMAT0021723 Anolis carolinensis miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>bdi-miR5180a MIMAT0020729 Brachypodium distachyon miR5180a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 8 gacact 3
>bdi-miR5180b MIMAT0020713 Brachypodium distachyon miR5180b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 8 gacact 3
>hsa-miR-4704-5p MIMAT0019803 Homo sapiens miR-4704-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacact 6
||||||
Sbjct: 1 gacact 6
>hsa-miR-4658 MIMAT0019725 Homo sapiens miR-4658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>gma-miR4379 MIMAT0018285 Glycine max miR4379
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>dme-miR-3641-5p MIMAT0018055 Drosophila melanogaster
miR-3641-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-4280 MIMAT0016911 Homo sapiens miR-4280
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>ppy-miR-122 MIMAT0015746 Pongo pygmaeus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mmu-miR-3095-3p MIMAT0014912 Mus musculus miR-3095-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacact 6
||||||
Sbjct: 3 gacact 8
>tgu-miR-122-5p MIMAT0014529 Taeniopygia guttata miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>eca-miR-122 MIMAT0012995 Equus caballus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>dps-miR-2555-5p MIMAT0012372 Drosophila pseudoobscura
miR-2555-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cel-miR-2209c-5p MIMAT0011433 Caenorhabditis elegans
miR-2209c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>cel-miR-2209a-5p MIMAT0011431 Caenorhabditis elegans
miR-2209a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>sme-miR-2155 MIMAT0011285 Schmidtea mediterranea miR-2155
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacact 6
||||||
Sbjct: 1 gacact 6
>ppt-miR1023e-5p MIMAT0010024 Physcomitrella patens miR1023e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>ptr-miR-122 MIMAT0007963 Pan troglodytes miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cfa-miR-122 MIMAT0006619 Canis familiaris miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mml-miR-122a-5p MIMAT0006180 Macaca mulatta miR-122a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>oan-miR-1352 MIMAT0006945 Ornithorhynchus anatinus miR-1352
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>oan-miR-122-5p MIMAT0006825 Ornithorhynchus anatinus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ppt-miR1023b-5p MIMAT0005104 Physcomitrella patens miR1023b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>ppt-miR1023a-5p MIMAT0005102 Physcomitrella patens miR1023a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>mmu-miR-574-5p MIMAT0004893 Mus musculus miR-574-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>mdo-miR-122-5p MIMAT0004101 Monodelphis domestica miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>bta-miR-122 MIMAT0003849 Bos taurus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>xtr-miR-122 MIMAT0003585 Xenopus tropicalis miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>tni-miR-122 MIMAT0002992 Tetraodon nigroviridis miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>fru-miR-122 MIMAT0002991 Fugu rubripes miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ssc-miR-122 MIMAT0002119 Sus scrofa miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>dre-miR-122 MIMAT0001818 Danio rerio miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>osa-miR440 MIMAT0001599 Oryza sativa miR440
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 6 gacact 1
>gga-miR-122-5p MIMAT0001190 Gallus gallus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>rno-miR-122-5p MIMAT0000827 Rattus norvegicus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-122-5p MIMAT0000421 Homo sapiens miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cel-miR-239a-3p MIMAT0020334 Caenorhabditis elegans miR-239a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacact 6
||||||
Sbjct: 6 gacact 1
>mmu-miR-122-5p MIMAT0000246 Mus musculus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 92
Number of extensions: 88
Number of successful extensions: 76
Number of sequences better than 100.0: 76
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
