BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-12-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p                  14      20
ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p                    14      20
pde-miR950 MIMAT0025342 Pinus densata miR950                           14      20
bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357                         14      20
mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p                  14      20
rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus miR-rL1...    14      20
hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978                        12      80
mdo-miR-7395-3p MIMAT0028889 Monodelphis domestica miR-7395-3p         12      80
mdo-miR-7277-5p MIMAT0028528 Monodelphis domestica miR-7277-5p         12      80
ssc-miR-7137-3p MIMAT0028150 Sus scrofa miR-7137-3p                    12      80
hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p                  12      80
hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p                  12      80
gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p                 12      80
ptc-miR6466-5p MIMAT0025194 Populus trichocarpa miR6466-5p             12      80
rno-miR-6326 MIMAT0025065 Rattus norvegicus miR-6326                   12      80
ppe-miR6270 MIMAT0027295 Prunus persica miR6270                        12      80
hsa-miR-6131 MIMAT0024615 Homo sapiens miR-6131                        12      80
ptr-miR-6131 MIMAT0024605 Pan troglodytes miR-6131                     12      80
ppy-miR-4774 MIMAT0024382 Pongo pygmaeus miR-4774                      12      80
gma-miR166m MIMAT0023247 Glycine max miR166m                           12      80
asu-miR-791-5p MIMAT0021529 Ascaris suum miR-791-5p                    12      80
mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228                   12      80
bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p         12      80
hsa-miR-4774-5p MIMAT0019929 Homo sapiens miR-4774-5p                  12      80
hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490                        12      80
tca-miR-3876-3p MIMAT0018845 Tribolium castaneum miR-3876-3p           12      80
tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p           12      80
cin-miR-4140-3p MIMAT0016739 Ciona intestinalis miR-4140-3p            12      80
cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p            12      80
cin-miR-4040-3p MIMAT0016570 Ciona intestinalis miR-4040-3p            12      80
bmo-miR-2754 MIMAT0013614 Bombyx mori miR-2754                         12      80
gga-miR-1625-5p MIMAT0007493 Gallus gallus miR-1625-5p                 12      80
oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus miR-1421...    12      80
cre-miR1157-5p MIMAT0005407 Chlamydomonas reinhardtii miR1157-5p       12      80
ppt-miR1024b MIMAT0005110 Physcomitrella patens miR1024b               12      80
ppt-miR1024a MIMAT0005109 Physcomitrella patens miR1024a               12      80
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1           12      80
ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2                12      80
dre-miR-735-5p MIMAT0032012 Danio rerio miR-735-5p                     12      80
mmu-miR-344d-2-5p MIMAT0014961 Mus musculus miR-344d-2-5p              12      80
hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus miR-UL22A-3p      12      80
>hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaccaga 7
         |||||||
Sbjct: 7 gaccaga 1
>ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaccaga 7
         |||||||
Sbjct: 7 gaccaga 1
>pde-miR950 MIMAT0025342 Pinus densata miR950
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaccaga 7
         |||||||
Sbjct: 7 gaccaga 1
>bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaccaga 7
         |||||||
Sbjct: 7 gaccaga 1
>mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaccaga 7
         |||||||
Sbjct: 7 gaccaga 1
>rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus
         miR-rL1-12-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gaccaga 7
         |||||||
Sbjct: 2 gaccaga 8
>hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>mdo-miR-7395-3p MIMAT0028889 Monodelphis domestica miR-7395-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 3 gaccag 8
>mdo-miR-7277-5p MIMAT0028528 Monodelphis domestica miR-7277-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>ssc-miR-7137-3p MIMAT0028150 Sus scrofa miR-7137-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 8 accaga 3
>hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 8 accaga 3
>gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>ptc-miR6466-5p MIMAT0025194 Populus trichocarpa miR6466-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>rno-miR-6326 MIMAT0025065 Rattus norvegicus miR-6326
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 6 gaccag 1
>ppe-miR6270 MIMAT0027295 Prunus persica miR6270
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 7 accaga 2
>hsa-miR-6131 MIMAT0024615 Homo sapiens miR-6131
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>ptr-miR-6131 MIMAT0024605 Pan troglodytes miR-6131
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>ppy-miR-4774 MIMAT0024382 Pongo pygmaeus miR-4774
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>gma-miR166m MIMAT0023247 Glycine max miR166m
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 3 gaccag 8
>asu-miR-791-5p MIMAT0021529 Ascaris suum miR-791-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 6 gaccag 1
>mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>hsa-miR-4774-5p MIMAT0019929 Homo sapiens miR-4774-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>tca-miR-3876-3p MIMAT0018845 Tribolium castaneum miR-3876-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 3 gaccag 8
>tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 8 accaga 3
>cin-miR-4140-3p MIMAT0016739 Ciona intestinalis miR-4140-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 accaga 7
         ||||||
Sbjct: 1 accaga 6
>cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>cin-miR-4040-3p MIMAT0016570 Ciona intestinalis miR-4040-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 accaga 7
         ||||||
Sbjct: 3 accaga 8
>bmo-miR-2754 MIMAT0013614 Bombyx mori miR-2754
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>gga-miR-1625-5p MIMAT0007493 Gallus gallus miR-1625-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 3 gaccag 8
>oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus
         miR-1421ak-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 6 gaccag 1
>cre-miR1157-5p MIMAT0005407 Chlamydomonas reinhardtii
         miR1157-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>ppt-miR1024b MIMAT0005110 Physcomitrella patens miR1024b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>ppt-miR1024a MIMAT0005109 Physcomitrella patens miR1024a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 6 accaga 1
>dre-miR-735-5p MIMAT0032012 Danio rerio miR-735-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaccag 6
         ||||||
Sbjct: 8 gaccag 3
>mmu-miR-344d-2-5p MIMAT0014961 Mus musculus miR-344d-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 accaga 7
         ||||||
Sbjct: 8 accaga 3
>hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus
         miR-UL22A-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 accaga 7
         ||||||
Sbjct: 3 accaga 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 60
Number of extensions: 54
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)