BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-12-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p 14 20
ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p 14 20
pde-miR950 MIMAT0025342 Pinus densata miR950 14 20
bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357 14 20
mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p 14 20
rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus miR-rL1... 14 20
hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978 12 80
mdo-miR-7395-3p MIMAT0028889 Monodelphis domestica miR-7395-3p 12 80
mdo-miR-7277-5p MIMAT0028528 Monodelphis domestica miR-7277-5p 12 80
ssc-miR-7137-3p MIMAT0028150 Sus scrofa miR-7137-3p 12 80
hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p 12 80
hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p 12 80
gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p 12 80
ptc-miR6466-5p MIMAT0025194 Populus trichocarpa miR6466-5p 12 80
rno-miR-6326 MIMAT0025065 Rattus norvegicus miR-6326 12 80
ppe-miR6270 MIMAT0027295 Prunus persica miR6270 12 80
hsa-miR-6131 MIMAT0024615 Homo sapiens miR-6131 12 80
ptr-miR-6131 MIMAT0024605 Pan troglodytes miR-6131 12 80
ppy-miR-4774 MIMAT0024382 Pongo pygmaeus miR-4774 12 80
gma-miR166m MIMAT0023247 Glycine max miR166m 12 80
asu-miR-791-5p MIMAT0021529 Ascaris suum miR-791-5p 12 80
mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228 12 80
bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p 12 80
hsa-miR-4774-5p MIMAT0019929 Homo sapiens miR-4774-5p 12 80
hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490 12 80
tca-miR-3876-3p MIMAT0018845 Tribolium castaneum miR-3876-3p 12 80
tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p 12 80
cin-miR-4140-3p MIMAT0016739 Ciona intestinalis miR-4140-3p 12 80
cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p 12 80
cin-miR-4040-3p MIMAT0016570 Ciona intestinalis miR-4040-3p 12 80
bmo-miR-2754 MIMAT0013614 Bombyx mori miR-2754 12 80
gga-miR-1625-5p MIMAT0007493 Gallus gallus miR-1625-5p 12 80
oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus miR-1421... 12 80
cre-miR1157-5p MIMAT0005407 Chlamydomonas reinhardtii miR1157-5p 12 80
ppt-miR1024b MIMAT0005110 Physcomitrella patens miR1024b 12 80
ppt-miR1024a MIMAT0005109 Physcomitrella patens miR1024a 12 80
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1 12 80
ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2 12 80
dre-miR-735-5p MIMAT0032012 Danio rerio miR-735-5p 12 80
mmu-miR-344d-2-5p MIMAT0014961 Mus musculus miR-344d-2-5p 12 80
hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus miR-UL22A-3p 12 80
>hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaccaga 7
|||||||
Sbjct: 7 gaccaga 1
>ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaccaga 7
|||||||
Sbjct: 7 gaccaga 1
>pde-miR950 MIMAT0025342 Pinus densata miR950
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaccaga 7
|||||||
Sbjct: 7 gaccaga 1
>bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaccaga 7
|||||||
Sbjct: 7 gaccaga 1
>mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaccaga 7
|||||||
Sbjct: 7 gaccaga 1
>rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus
miR-rL1-12-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaccaga 7
|||||||
Sbjct: 2 gaccaga 8
>hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>mdo-miR-7395-3p MIMAT0028889 Monodelphis domestica miR-7395-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaccag 6
||||||
Sbjct: 3 gaccag 8
>mdo-miR-7277-5p MIMAT0028528 Monodelphis domestica miR-7277-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>ssc-miR-7137-3p MIMAT0028150 Sus scrofa miR-7137-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ptc-miR6466-5p MIMAT0025194 Populus trichocarpa miR6466-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>rno-miR-6326 MIMAT0025065 Rattus norvegicus miR-6326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 6 gaccag 1
>ppe-miR6270 MIMAT0027295 Prunus persica miR6270
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 7 accaga 2
>hsa-miR-6131 MIMAT0024615 Homo sapiens miR-6131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>ptr-miR-6131 MIMAT0024605 Pan troglodytes miR-6131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>ppy-miR-4774 MIMAT0024382 Pongo pygmaeus miR-4774
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>gma-miR166m MIMAT0023247 Glycine max miR166m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaccag 6
||||||
Sbjct: 3 gaccag 8
>asu-miR-791-5p MIMAT0021529 Ascaris suum miR-791-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 6 gaccag 1
>mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>hsa-miR-4774-5p MIMAT0019929 Homo sapiens miR-4774-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>tca-miR-3876-3p MIMAT0018845 Tribolium castaneum miR-3876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaccag 6
||||||
Sbjct: 3 gaccag 8
>tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>cin-miR-4140-3p MIMAT0016739 Ciona intestinalis miR-4140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accaga 7
||||||
Sbjct: 1 accaga 6
>cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>cin-miR-4040-3p MIMAT0016570 Ciona intestinalis miR-4040-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accaga 7
||||||
Sbjct: 3 accaga 8
>bmo-miR-2754 MIMAT0013614 Bombyx mori miR-2754
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>gga-miR-1625-5p MIMAT0007493 Gallus gallus miR-1625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaccag 6
||||||
Sbjct: 3 gaccag 8
>oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus
miR-1421ak-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 6 gaccag 1
>cre-miR1157-5p MIMAT0005407 Chlamydomonas reinhardtii
miR1157-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>ppt-miR1024b MIMAT0005110 Physcomitrella patens miR1024b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ppt-miR1024a MIMAT0005109 Physcomitrella patens miR1024a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>dre-miR-735-5p MIMAT0032012 Danio rerio miR-735-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gaccag 6
||||||
Sbjct: 8 gaccag 3
>mmu-miR-344d-2-5p MIMAT0014961 Mus musculus miR-344d-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus
miR-UL22A-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accaga 7
||||||
Sbjct: 3 accaga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 60
Number of extensions: 54
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)