BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART4-5p MIMAT0003412 Epstein Barr miR-BART4-5p 16 6.9
ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p 14 27
ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p 14 27
vvi-miR3640-5p MIMAT0018053 Vitis vinifera miR3640-5p 14 27
bta-miR-2323 MIMAT0011852 Bos taurus miR-2323 14 27
nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis miR-2040b-5p 14 27
pta-miR950b MIMAT0005011 Pinus taeda miR950b 14 27
pta-miR950a MIMAT0005010 Pinus taeda miR950a 14 27
>ebv-miR-BART4-5p MIMAT0003412 Epstein Barr miR-BART4-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gacctgat 8
||||||||
Sbjct: 1 gacctgat 8
>ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acctgat 8
|||||||
Sbjct: 2 acctgat 8
>ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacctga 7
|||||||
Sbjct: 7 gacctga 1
>vvi-miR3640-5p MIMAT0018053 Vitis vinifera miR3640-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acctgat 8
|||||||
Sbjct: 1 acctgat 7
>bta-miR-2323 MIMAT0011852 Bos taurus miR-2323
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacctga 7
|||||||
Sbjct: 2 gacctga 8
>nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis
miR-2040b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacctga 7
|||||||
Sbjct: 7 gacctga 1
>pta-miR950b MIMAT0005011 Pinus taeda miR950b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacctga 7
|||||||
Sbjct: 7 gacctga 1
>pta-miR950a MIMAT0005010 Pinus taeda miR950a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacctga 7
|||||||
Sbjct: 7 gacctga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 173
Number of extensions: 164
Number of successful extensions: 138
Number of sequences better than 100.0: 8
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)