BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ebv-miR-bart4
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ebv-miR-BART4-5p MIMAT0003412 Epstein Barr miR-BART4-5p                16   6.9  
ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p        14      27
ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p                   14      27
vvi-miR3640-5p MIMAT0018053 Vitis vinifera miR3640-5p                  14      27
bta-miR-2323 MIMAT0011852 Bos taurus miR-2323                          14      27
nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis miR-2040b-5p      14      27
pta-miR950b MIMAT0005011 Pinus taeda miR950b                           14      27
pta-miR950a MIMAT0005010 Pinus taeda miR950a                           14      27
>ebv-miR-BART4-5p MIMAT0003412 Epstein Barr miR-BART4-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gacctgat 8
         ||||||||
Sbjct: 1 gacctgat 8
>ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 acctgat 8
         |||||||
Sbjct: 2 acctgat 8
>ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gacctga 7
         |||||||
Sbjct: 7 gacctga 1
>vvi-miR3640-5p MIMAT0018053 Vitis vinifera miR3640-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 acctgat 8
         |||||||
Sbjct: 1 acctgat 7
>bta-miR-2323 MIMAT0011852 Bos taurus miR-2323
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gacctga 7
         |||||||
Sbjct: 2 gacctga 8
>nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis
         miR-2040b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gacctga 7
         |||||||
Sbjct: 7 gacctga 1
>pta-miR950b MIMAT0005011 Pinus taeda miR950b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gacctga 7
         |||||||
Sbjct: 7 gacctga 1
>pta-miR950a MIMAT0005010 Pinus taeda miR950a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gacctga 7
         |||||||
Sbjct: 7 gacctga 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 173
Number of extensions: 164
Number of successful extensions: 138
Number of sequences better than 100.0: 8
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)