BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s79
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8334-3p MIMAT0033213 Pristionchus pacificus miR-8334-3p 14 20
bdi-miR7725a-5p MIMAT0030178 Brachypodium distachyon miR7725a-5p 14 20
bmo-miR-3322 MIMAT0015509 Bombyx mori miR-3322 14 20
bfl-miR-2075 MIMAT0010004 Branchiostoma floridae miR-2075 14 20
bra-miR9565-5p MIMAT0035689 Brassica rapa miR9565-5p 12 80
bdi-miR9499 MIMAT0035508 Brachypodium distachyon miR9499 12 80
ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p 12 80
stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p 12 80
mdo-miR-7255-5p MIMAT0028476 Monodelphis domestica miR-7255-5p 12 80
cme-miR858 MIMAT0026083 Cucumis melo miR858 12 80
hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196 12 80
ame-miR-6046 MIMAT0023669 Apis mellifera miR-6046 12 80
osa-miR5819 MIMAT0023292 Oryza sativa miR5819 12 80
bdi-miR5173-5p MIMAT0020717 Brachypodium distachyon miR5173-5p 12 80
pma-miR-4582 MIMAT0019615 Petromyzon marinus miR-4582 12 80
ame-miR-3741 MIMAT0018610 Apis mellifera miR-3741 12 80
bta-miR-3601 MIMAT0016936 Bos taurus miR-3601 12 80
api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022 12 80
bhv1-miR-B1 MIMAT0013962 Bovine herpesvirus miR-B1 12 80
iltv-miR-I5-5p MIMAT0012728 Infectious laryngotracheitis miR-I5-5p 12 80
mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p 12 80
sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p 12 80
sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b 12 80
sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a 12 80
rno-miR-375-5p MIMAT0017301 Rattus norvegicus miR-375-5p 12 80
mmu-miR-375-5p MIMAT0017078 Mus musculus miR-375-5p 12 80
>ppc-miR-8334-3p MIMAT0033213 Pristionchus pacificus miR-8334-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacgaga 7
|||||||
Sbjct: 2 gacgaga 8
>bdi-miR7725a-5p MIMAT0030178 Brachypodium distachyon
miR7725a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacgaga 7
|||||||
Sbjct: 2 gacgaga 8
>bmo-miR-3322 MIMAT0015509 Bombyx mori miR-3322
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacgaga 7
|||||||
Sbjct: 7 gacgaga 1
>bfl-miR-2075 MIMAT0010004 Branchiostoma floridae miR-2075
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacgaga 7
|||||||
Sbjct: 8 gacgaga 2
>bra-miR9565-5p MIMAT0035689 Brassica rapa miR9565-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 6 acgaga 1
>bdi-miR9499 MIMAT0035508 Brachypodium distachyon miR9499
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacgag 6
||||||
Sbjct: 8 gacgag 3
>ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 1 acgaga 6
>stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 1 acgaga 6
>mdo-miR-7255-5p MIMAT0028476 Monodelphis domestica miR-7255-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
>cme-miR858 MIMAT0026083 Cucumis melo miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 6 acgaga 1
>hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
>ame-miR-6046 MIMAT0023669 Apis mellifera miR-6046
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
>osa-miR5819 MIMAT0023292 Oryza sativa miR5819
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
>bdi-miR5173-5p MIMAT0020717 Brachypodium distachyon miR5173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 6 acgaga 1
>pma-miR-4582 MIMAT0019615 Petromyzon marinus miR-4582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 6 acgaga 1
>ame-miR-3741 MIMAT0018610 Apis mellifera miR-3741
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 1 acgaga 6
>bta-miR-3601 MIMAT0016936 Bos taurus miR-3601
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 6 acgaga 1
>api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 6 acgaga 1
>bhv1-miR-B1 MIMAT0013962 Bovine herpesvirus miR-B1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 3 acgaga 8
>iltv-miR-I5-5p MIMAT0012728 Infectious laryngotracheitis
miR-I5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgaga 7
||||||
Sbjct: 8 acgaga 3
>mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
>sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 1 acgaga 6
>sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 1 acgaga 6
>sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgaga 7
||||||
Sbjct: 1 acgaga 6
>rno-miR-375-5p MIMAT0017301 Rattus norvegicus miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
>mmu-miR-375-5p MIMAT0017078 Mus musculus miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacgag 6
||||||
Sbjct: 3 gacgag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 38
Number of extensions: 34
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
