BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r95.1-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8242-5p MIMAT0032942 Pristionchus pacificus miR-8242-5p 14 27
sbi-miR6224c-5p MIMAT0026418 Sorghum bicolor miR6224c-5p 14 27
sbi-miR6224b-5p MIMAT0026416 Sorghum bicolor miR6224b-5p 14 27
sbi-miR6224a-5p MIMAT0026414 Sorghum bicolor miR6224a-5p 14 27
hhv6b-miR-Ro6-3-5p MIMAT0026460 Human herpesvirus miR-Ro6-3-5p 14 27
hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091 14 27
osa-miR5075 MIMAT0020561 Oryza sativa miR5075 14 27
rno-miR-802-3p MIMAT0017362 Rattus norvegicus miR-802-3p 14 27
tae-miR1130a MIMAT0005365 Triticum aestivum miR1130a 14 27
mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p 14 27
sme-miR-184-3p MIMAT0004000 Schmidtea mediterranea miR-184-3p 14 27
mmu-miR-802-3p MIMAT0017240 Mus musculus miR-802-3p 14 27
>ppc-miR-8242-5p MIMAT0032942 Pristionchus pacificus miR-8242-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacggag 7
|||||||
Sbjct: 8 gacggag 2
>sbi-miR6224c-5p MIMAT0026418 Sorghum bicolor miR6224c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacggag 7
|||||||
Sbjct: 7 gacggag 1
>sbi-miR6224b-5p MIMAT0026416 Sorghum bicolor miR6224b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacggag 7
|||||||
Sbjct: 7 gacggag 1
>sbi-miR6224a-5p MIMAT0026414 Sorghum bicolor miR6224a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacggag 7
|||||||
Sbjct: 7 gacggag 1
>hhv6b-miR-Ro6-3-5p MIMAT0026460 Human herpesvirus miR-Ro6-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacggag 7
|||||||
Sbjct: 1 gacggag 7
>hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acggaga 8
|||||||
Sbjct: 1 acggaga 7
>osa-miR5075 MIMAT0020561 Oryza sativa miR5075
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggaga 8
|||||||
Sbjct: 8 acggaga 2
>rno-miR-802-3p MIMAT0017362 Rattus norvegicus miR-802-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acggaga 8
|||||||
Sbjct: 1 acggaga 7
>tae-miR1130a MIMAT0005365 Triticum aestivum miR1130a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacggag 7
|||||||
Sbjct: 8 gacggag 2
>mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggaga 8
|||||||
Sbjct: 8 acggaga 2
>sme-miR-184-3p MIMAT0004000 Schmidtea mediterranea miR-184-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gacggag 7
|||||||
Sbjct: 1 gacggag 7
>mmu-miR-802-3p MIMAT0017240 Mus musculus miR-802-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acggaga 8
|||||||
Sbjct: 1 acggaga 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 153
Number of successful extensions: 147
Number of sequences better than 100.0: 12
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
