BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh183-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498 14 27
mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g 14 27
cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973 14 27
mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f 14 27
mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e 14 27
mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d 14 27
mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c 14 27
mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b 14 27
mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a 14 27
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360 14 27
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p 14 27
>bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gacggtc 7
|||||||
Sbjct: 7 gacggtc 1
>mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 7 acggtca 1
>mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 8 acggtca 2
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 7 acggtca 1
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acggtca 8
|||||||
Sbjct: 7 acggtca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 65
Number of extensions: 54
Number of successful extensions: 48
Number of sequences better than 100.0: 11
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)