BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rhcmv-miR-rh183-2
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498               14      27
mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g                 14      27
cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973                  14      27
mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f                 14      27
mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e                 14      27
mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d                 14      27
mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c                 14      27
mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b                 14      27
mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a                 14      27
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360               14      27
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p          14      27
>bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gacggtc 7
         |||||||
Sbjct: 7 gacggtc 1
>mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 7 acggtca 1
>mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 8 acggtca 2
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 7 acggtca 1
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acggtca 8
         |||||||
Sbjct: 7 acggtca 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 65
Number of extensions: 54
Number of successful extensions: 48
Number of sequences better than 100.0: 11
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)