BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6507-3p MIMAT0025471 Homo sapiens miR-6507-3p 14 20
dvi-miR-284-3p MIMAT0008977 Drosophila virilis miR-284-3p 14 20
dmo-miR-284 MIMAT0008628 Drosophila mojavensis miR-284 14 20
dgr-miR-284 MIMAT0008611 Drosophila grimshawi miR-284 14 20
ssc-miR-9791-3p MIMAT0037009 Sus scrofa miR-9791-3p 12 80
oha-miR-17-5p MIMAT0036751 Ophiophagus hannah miR-17-5p 12 80
tch-miR-93-5p MIMAT0036617 Tupaia chinensis miR-93-5p 12 80
tch-miR-9771g MIMAT0036542 Tupaia chinensis miR-9771g 12 80
tch-miR-17-5p MIMAT0036516 Tupaia chinensis miR-17-5p 12 80
tch-miR-9771d MIMAT0036513 Tupaia chinensis miR-9771d 12 80
ggo-miR-519d MIMAT0036425 Gorilla gorilla miR-519d 12 80
chi-miR-93-5p MIMAT0036305 Capra hircus miR-93-5p 12 80
chi-miR-20b MIMAT0036056 Capra hircus miR-20b 12 80
chi-miR-17-5p MIMAT0035998 Capra hircus miR-17-5p 12 80
esi-miR8624b MIMAT0033971 Ectocarpus siliculosus miR8624b 12 80
sma-miR-8456-5p MIMAT0033624 Schistosoma mansoni miR-8456-5p 12 80
sma-miR-8443-5p MIMAT0033594 Schistosoma mansoni miR-8443-5p 12 80
ppc-miR-76-5p MIMAT0033087 Pristionchus pacificus miR-76-5p 12 80
ssa-miR-20b-5p MIMAT0032506 Salmo salar miR-20b-5p 12 80
ssa-miR-17-5p MIMAT0032414 Salmo salar miR-17-5p 12 80
stu-miR8012 MIMAT0030908 Solanum tuberosum miR8012 12 80
prd-miR-360-3p MIMAT0030541 Panagrellus redivivus miR-360-3p 12 80
oar-miR-17-5p MIMAT0030037 Ovis aries miR-17-5p 12 80
cbn-miR-85 MIMAT0029780 Caenorhabditis brenneri miR-85 12 80
mdo-miR-20b-5p MIMAT0028764 Monodelphis domestica miR-20b-5p 12 80
mdo-miR-7263-3p MIMAT0028493 Monodelphis domestica miR-7263-3p 12 80
ccr-miR-17-5p MIMAT0026236 Cyprinus carpio miR-17-5p 12 80
ssc-miR-20b MIMAT0025359 Sus scrofa miR-20b 12 80
rno-miR-6325 MIMAT0025064 Rattus norvegicus miR-6325 12 80
ggo-miR-20b MIMAT0024227 Gorilla gorilla miR-20b 12 80
cgr-miR-93-5p MIMAT0024013 Cricetulus griseus miR-93-5p 12 80
cgr-miR-17-5p MIMAT0023795 Cricetulus griseus miR-17-5p 12 80
sha-miR-93 MIMAT0022819 Sarcophilus harrisii miR-93 12 80
ola-miR-17 MIMAT0022654 Oryzias latipes miR-17 12 80
mmu-miR-5709-3p MIMAT0027104 Mus musculus miR-5709-3p 12 80
aca-miR-20b-5p MIMAT0021863 Anolis carolinensis miR-20b-5p 12 80
aca-miR-17-5p MIMAT0021803 Anolis carolinensis miR-17-5p 12 80
bdi-miR5167a-5p MIMAT0020709 Brachypodium distachyon miR5167a-5p 12 80
bfl-miR-4875d-3p MIMAT0020458 Branchiostoma floridae miR-4875d-3p 12 80
pma-miR-20b MIMAT0019397 Petromyzon marinus miR-20b 12 80
pma-miR-20a-5p MIMAT0019395 Petromyzon marinus miR-20a-5p 12 80
pma-miR-17a-5p MIMAT0019383 Petromyzon marinus miR-17a-5p 12 80
hsa-miR-3609 MIMAT0017986 Homo sapiens miR-3609 12 80
cin-miR-4031-5p MIMAT0016551 Ciona intestinalis miR-4031-5p 12 80
cin-miR-4007-5p MIMAT0016486 Ciona intestinalis miR-4007-5p 12 80
ppy-miR-519d MIMAT0015964 Pongo pygmaeus miR-519d 12 80
ppy-miR-20b MIMAT0015732 Pongo pygmaeus miR-20b 12 80
mmu-miR-3470a MIMAT0015640 Mus musculus miR-3470a 12 80
aly-miR163-5p.2 MIMAT0017678 Arabidopsis lyrata miR163-5p.2 12 80
aly-miR829-5p MIMAT0017611 Arabidopsis lyrata miR829-5p 12 80
bmo-miR-3427 MIMAT0015635 Bombyx mori miR-3427 12 80
bmo-miR-3339 MIMAT0015527 Bombyx mori miR-3339 12 80
hsa-miR-3184-3p MIMAT0022731 Homo sapiens miR-3184-3p 12 80
tgu-miR-20b-5p MIMAT0014591 Taeniopygia guttata miR-20b-5p 12 80
tgu-miR-365-1-5p MIMAT0027013 Taeniopygia guttata miR-365-1-5p 12 80
tgu-miR-17a-5p MIMAT0017390 Taeniopygia guttata miR-17a-5p 12 80
bta-miR-193a MIMAT0013837 Bos taurus miR-193a 12 80
eca-miR-20b MIMAT0013202 Equus caballus miR-20b 12 80
eca-miR-106a MIMAT0013194 Equus caballus miR-106a 12 80
eca-miR-17 MIMAT0013084 Equus caballus miR-17 12 80
eca-miR-93 MIMAT0013060 Equus caballus miR-93 12 80
bmo-miR-2763-5p MIMAT0013637 Bombyx mori miR-2763-5p 12 80
dsi-miR-2582b-3p MIMAT0012524 Drosophila simulans miR-2582b-3p 12 80
crm-miR-50-3p MIMAT0011590 Caenorhabditis remanei miR-50-3p 12 80
crm-miR-85 MIMAT0011531 Caenorhabditis remanei miR-85 12 80
cfa-miR-20b MIMAT0009830 Canis familiaris miR-20b 12 80
cte-miR-2000 MIMAT0009711 Capitella teleta miR-2000 12 80
ptr-miR-519d MIMAT0008195 Pan troglodytes miR-519d 12 80
ptr-miR-20b MIMAT0008069 Pan troglodytes miR-20b 12 80
ssc-miR-17-5p MIMAT0007755 Sus scrofa miR-17-5p 12 80
cfa-miR-93 MIMAT0006696 Canis familiaris miR-93 12 80
mml-miR-519d MIMAT0006387 Macaca mulatta miR-519d 12 80
mml-miR-20b-5p MIMAT0006164 Macaca mulatta miR-20b-5p 12 80
oan-miR-17-5p MIMAT0007278 Ornithorhynchus anatinus miR-17-5p 12 80
oan-miR-20b-5p MIMAT0006853 Ornithorhynchus anatinus miR-20b-5p 12 80
smo-miR1112-5p MIMAT0005269 Selaginella moellendorffii miR1112-5p 12 80
ppt-miR1059 MIMAT0005177 Physcomitrella patens miR1059 12 80
ppt-miR1034 MIMAT0005141 Physcomitrella patens miR1034 12 80
ath-miR829-5p MIMAT0032019 Arabidopsis thaliana miR829-5p 12 80
mdo-miR-17-5p MIMAT0004165 Monodelphis domestica miR-17-5p 12 80
bta-miR-93 MIMAT0003837 Bos taurus miR-93 12 80
bta-miR-17-5p MIMAT0003815 Bos taurus miR-17-5p 12 80
bta-miR-20b MIMAT0003796 Bos taurus miR-20b 12 80
xtr-miR-20b MIMAT0003707 Xenopus tropicalis miR-20b 12 80
xtr-miR-17-5p MIMAT0003564 Xenopus tropicalis miR-17-5p 12 80
hsa-miR-561-3p MIMAT0003225 Homo sapiens miR-561-3p 12 80
rno-miR-20b-5p MIMAT0003211 Rattus norvegicus miR-20b-5p 12 80
mmu-miR-20b-5p MIMAT0003187 Mus musculus miR-20b-5p 12 80
tni-miR-17 MIMAT0002917 Tetraodon nigroviridis miR-17 12 80
fru-miR-17 MIMAT0002916 Fugu rubripes miR-17 12 80
hsa-miR-519d-3p MIMAT0002853 Homo sapiens miR-519d-3p 12 80
mne-miR-17-5p MIMAT0002721 Macaca nemestrina miR-17-5p 12 80
lla-miR-17-5p MIMAT0002714 Lagothrix lagotricha miR-17-5p 12 80
sla-miR-17-5p MIMAT0002707 Saguinus labiatus miR-17-5p 12 80
mml-miR-17-5p MIMAT0002700 Macaca mulatta miR-17-5p 12 80
ptr-miR-17-5p MIMAT0002693 Pan troglodytes miR-17-5p 12 80
ppy-miR-17-5p MIMAT0002686 Pongo pygmaeus miR-17-5p 12 80
ppa-miR-17-5p MIMAT0002679 Pan paniscus miR-17-5p 12 80
age-miR-17-5p MIMAT0002672 Ateles geoffroyi miR-17-5p 12 80
lca-miR-17-5p MIMAT0002665 Lemur catta miR-17-5p 12 80
ggo-miR-17-5p MIMAT0002658 Gorilla gorilla miR-17-5p 12 80
dre-miR-20b-5p MIMAT0001778 Danio rerio miR-20b-5p 12 80
dre-miR-17a-5p MIMAT0001777 Danio rerio miR-17a-5p 12 80
aga-miR-9b MIMAT0001529 Anopheles gambiae miR-9b 12 80
hsa-miR-20b-5p MIMAT0001413 Homo sapiens miR-20b-5p 12 80
gga-miR-20b-5p MIMAT0001411 Gallus gallus miR-20b-5p 12 80
xla-miR-20 MIMAT0001348 Xenopus laevis miR-20 12 80
gga-miR-17-5p MIMAT0001114 Gallus gallus miR-17-5p 12 80
rno-miR-93-5p MIMAT0000817 Rattus norvegicus miR-93-5p 12 80
rno-miR-17-5p MIMAT0000786 Rattus norvegicus miR-17-5p 12 80
mmu-miR-17-5p MIMAT0000649 Mus musculus miR-17-5p 12 80
mmu-miR-93-5p MIMAT0000540 Mus musculus miR-93-5p 12 80
cbr-miR-85 MIMAT0000490 Caenorhabditis briggsae miR-85 12 80
mmu-miR-106a-5p MIMAT0000385 Mus musculus miR-106a-5p 12 80
hsa-miR-93-5p MIMAT0000093 Homo sapiens miR-93-5p 12 80
hsa-miR-17-5p MIMAT0000070 Homo sapiens miR-17-5p 12 80
cel-miR-85-3p MIMAT0000058 Caenorhabditis elegans miR-85-3p 12 80
>hsa-miR-6507-3p MIMAT0025471 Homo sapiens miR-6507-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gactttg 7
|||||||
Sbjct: 7 gactttg 1
>dvi-miR-284-3p MIMAT0008977 Drosophila virilis miR-284-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gactttg 7
|||||||
Sbjct: 7 gactttg 1
>dmo-miR-284 MIMAT0008628 Drosophila mojavensis miR-284
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gactttg 7
|||||||
Sbjct: 7 gactttg 1
>dgr-miR-284 MIMAT0008611 Drosophila grimshawi miR-284
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gactttg 7
|||||||
Sbjct: 7 gactttg 1
>ssc-miR-9791-3p MIMAT0037009 Sus scrofa miR-9791-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>oha-miR-17-5p MIMAT0036751 Ophiophagus hannah miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>tch-miR-93-5p MIMAT0036617 Tupaia chinensis miR-93-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>tch-miR-9771g MIMAT0036542 Tupaia chinensis miR-9771g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 8 gacttt 3
>tch-miR-17-5p MIMAT0036516 Tupaia chinensis miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>tch-miR-9771d MIMAT0036513 Tupaia chinensis miR-9771d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>ggo-miR-519d MIMAT0036425 Gorilla gorilla miR-519d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>chi-miR-93-5p MIMAT0036305 Capra hircus miR-93-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>chi-miR-20b MIMAT0036056 Capra hircus miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>chi-miR-17-5p MIMAT0035998 Capra hircus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>esi-miR8624b MIMAT0033971 Ectocarpus siliculosus miR8624b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>sma-miR-8456-5p MIMAT0033624 Schistosoma mansoni miR-8456-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 3 actttg 8
>sma-miR-8443-5p MIMAT0033594 Schistosoma mansoni miR-8443-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 1 actttg 6
>ppc-miR-76-5p MIMAT0033087 Pristionchus pacificus miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>ssa-miR-20b-5p MIMAT0032506 Salmo salar miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ssa-miR-17-5p MIMAT0032414 Salmo salar miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>stu-miR8012 MIMAT0030908 Solanum tuberosum miR8012
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>prd-miR-360-3p MIMAT0030541 Panagrellus redivivus miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 3 actttg 8
>oar-miR-17-5p MIMAT0030037 Ovis aries miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cbn-miR-85 MIMAT0029780 Caenorhabditis brenneri miR-85
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>mdo-miR-20b-5p MIMAT0028764 Monodelphis domestica miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mdo-miR-7263-3p MIMAT0028493 Monodelphis domestica miR-7263-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>ccr-miR-17-5p MIMAT0026236 Cyprinus carpio miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ssc-miR-20b MIMAT0025359 Sus scrofa miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>rno-miR-6325 MIMAT0025064 Rattus norvegicus miR-6325
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 6 gacttt 1
>ggo-miR-20b MIMAT0024227 Gorilla gorilla miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cgr-miR-93-5p MIMAT0024013 Cricetulus griseus miR-93-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cgr-miR-17-5p MIMAT0023795 Cricetulus griseus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>sha-miR-93 MIMAT0022819 Sarcophilus harrisii miR-93
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ola-miR-17 MIMAT0022654 Oryzias latipes miR-17
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mmu-miR-5709-3p MIMAT0027104 Mus musculus miR-5709-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 6 gacttt 1
>aca-miR-20b-5p MIMAT0021863 Anolis carolinensis miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>aca-miR-17-5p MIMAT0021803 Anolis carolinensis miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>bdi-miR5167a-5p MIMAT0020709 Brachypodium distachyon
miR5167a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 3 actttg 8
>bfl-miR-4875d-3p MIMAT0020458 Branchiostoma floridae
miR-4875d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>pma-miR-20b MIMAT0019397 Petromyzon marinus miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>pma-miR-20a-5p MIMAT0019395 Petromyzon marinus miR-20a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>pma-miR-17a-5p MIMAT0019383 Petromyzon marinus miR-17a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>hsa-miR-3609 MIMAT0017986 Homo sapiens miR-3609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cin-miR-4031-5p MIMAT0016551 Ciona intestinalis miR-4031-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>cin-miR-4007-5p MIMAT0016486 Ciona intestinalis miR-4007-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>ppy-miR-519d MIMAT0015964 Pongo pygmaeus miR-519d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ppy-miR-20b MIMAT0015732 Pongo pygmaeus miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mmu-miR-3470a MIMAT0015640 Mus musculus miR-3470a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 3 actttg 8
>aly-miR163-5p.2 MIMAT0017678 Arabidopsis lyrata miR163-5p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 1 gacttt 6
>aly-miR829-5p MIMAT0017611 Arabidopsis lyrata miR829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 1 actttg 6
>bmo-miR-3427 MIMAT0015635 Bombyx mori miR-3427
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 8 gacttt 3
>bmo-miR-3339 MIMAT0015527 Bombyx mori miR-3339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>hsa-miR-3184-3p MIMAT0022731 Homo sapiens miR-3184-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 6 gacttt 1
>tgu-miR-20b-5p MIMAT0014591 Taeniopygia guttata miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>tgu-miR-365-1-5p MIMAT0027013 Taeniopygia guttata miR-365-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>tgu-miR-17a-5p MIMAT0017390 Taeniopygia guttata miR-17a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>bta-miR-193a MIMAT0013837 Bos taurus miR-193a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gacttt 6
||||||
Sbjct: 3 gacttt 8
>eca-miR-20b MIMAT0013202 Equus caballus miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>eca-miR-106a MIMAT0013194 Equus caballus miR-106a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>eca-miR-17 MIMAT0013084 Equus caballus miR-17
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>eca-miR-93 MIMAT0013060 Equus caballus miR-93
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>bmo-miR-2763-5p MIMAT0013637 Bombyx mori miR-2763-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>dsi-miR-2582b-3p MIMAT0012524 Drosophila simulans miR-2582b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 3 actttg 8
>crm-miR-50-3p MIMAT0011590 Caenorhabditis remanei miR-50-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>crm-miR-85 MIMAT0011531 Caenorhabditis remanei miR-85
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>cfa-miR-20b MIMAT0009830 Canis familiaris miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cte-miR-2000 MIMAT0009711 Capitella teleta miR-2000
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 6 gacttt 1
>ptr-miR-519d MIMAT0008195 Pan troglodytes miR-519d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ptr-miR-20b MIMAT0008069 Pan troglodytes miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ssc-miR-17-5p MIMAT0007755 Sus scrofa miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cfa-miR-93 MIMAT0006696 Canis familiaris miR-93
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mml-miR-519d MIMAT0006387 Macaca mulatta miR-519d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mml-miR-20b-5p MIMAT0006164 Macaca mulatta miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>oan-miR-17-5p MIMAT0007278 Ornithorhynchus anatinus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>oan-miR-20b-5p MIMAT0006853 Ornithorhynchus anatinus miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>smo-miR1112-5p MIMAT0005269 Selaginella moellendorffii
miR1112-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 1 actttg 6
>ppt-miR1059 MIMAT0005177 Physcomitrella patens miR1059
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gacttt 6
||||||
Sbjct: 8 gacttt 3
>ppt-miR1034 MIMAT0005141 Physcomitrella patens miR1034
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 3 actttg 8
>ath-miR829-5p MIMAT0032019 Arabidopsis thaliana miR829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 1 actttg 6
>mdo-miR-17-5p MIMAT0004165 Monodelphis domestica miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>bta-miR-93 MIMAT0003837 Bos taurus miR-93
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>bta-miR-17-5p MIMAT0003815 Bos taurus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>bta-miR-20b MIMAT0003796 Bos taurus miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>xtr-miR-20b MIMAT0003707 Xenopus tropicalis miR-20b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>xtr-miR-17-5p MIMAT0003564 Xenopus tropicalis miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>hsa-miR-561-3p MIMAT0003225 Homo sapiens miR-561-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>rno-miR-20b-5p MIMAT0003211 Rattus norvegicus miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mmu-miR-20b-5p MIMAT0003187 Mus musculus miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>tni-miR-17 MIMAT0002917 Tetraodon nigroviridis miR-17
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>fru-miR-17 MIMAT0002916 Fugu rubripes miR-17
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>hsa-miR-519d-3p MIMAT0002853 Homo sapiens miR-519d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mne-miR-17-5p MIMAT0002721 Macaca nemestrina miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>lla-miR-17-5p MIMAT0002714 Lagothrix lagotricha miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>sla-miR-17-5p MIMAT0002707 Saguinus labiatus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mml-miR-17-5p MIMAT0002700 Macaca mulatta miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ptr-miR-17-5p MIMAT0002693 Pan troglodytes miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ppy-miR-17-5p MIMAT0002686 Pongo pygmaeus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ppa-miR-17-5p MIMAT0002679 Pan paniscus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>age-miR-17-5p MIMAT0002672 Ateles geoffroyi miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>lca-miR-17-5p MIMAT0002665 Lemur catta miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>ggo-miR-17-5p MIMAT0002658 Gorilla gorilla miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>dre-miR-20b-5p MIMAT0001778 Danio rerio miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>dre-miR-17a-5p MIMAT0001777 Danio rerio miR-17a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>aga-miR-9b MIMAT0001529 Anopheles gambiae miR-9b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actttg 7
||||||
Sbjct: 1 actttg 6
>hsa-miR-20b-5p MIMAT0001413 Homo sapiens miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>gga-miR-20b-5p MIMAT0001411 Gallus gallus miR-20b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>xla-miR-20 MIMAT0001348 Xenopus laevis miR-20
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>gga-miR-17-5p MIMAT0001114 Gallus gallus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>rno-miR-93-5p MIMAT0000817 Rattus norvegicus miR-93-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>rno-miR-17-5p MIMAT0000786 Rattus norvegicus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mmu-miR-17-5p MIMAT0000649 Mus musculus miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>mmu-miR-93-5p MIMAT0000540 Mus musculus miR-93-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cbr-miR-85 MIMAT0000490 Caenorhabditis briggsae miR-85
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
>mmu-miR-106a-5p MIMAT0000385 Mus musculus miR-106a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>hsa-miR-93-5p MIMAT0000093 Homo sapiens miR-93-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>hsa-miR-17-5p MIMAT0000070 Homo sapiens miR-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 6 actttg 1
>cel-miR-85-3p MIMAT0000058 Caenorhabditis elegans miR-85-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actttg 7
||||||
Sbjct: 8 actttg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 149
Number of extensions: 145
Number of successful extensions: 117
Number of sequences better than 100.0: 117
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 117
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
