BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR144
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cfa-miR-8874 MIMAT0034374 Canis familiaris miR-8874 16 6.9
ssa-miR-7132a-3p MIMAT0032666 Salmo salar miR-7132a-3p 14 27
bbe-miR-2058-5p MIMAT0031615 Branchiostoma belcheri miR-2058-5p 14 27
bbe-miR-2057-5p MIMAT0031613 Branchiostoma belcheri miR-2057-5p 14 27
hsa-miR-4795-5p MIMAT0019968 Homo sapiens miR-4795-5p 14 27
bta-miR-2284i MIMAT0011792 Bos taurus miR-2284i 14 27
bfl-miR-2058-5p MIMAT0009984 Branchiostoma floridae miR-2058-5p 14 27
bfl-miR-2057 MIMAT0009983 Branchiostoma floridae miR-2057 14 27
smo-miR1094b MIMAT0005248 Selaginella moellendorffii miR1094b 14 27
smo-miR1094a MIMAT0005247 Selaginella moellendorffii miR1094a 14 27
>cfa-miR-8874 MIMAT0034374 Canis familiaris miR-8874
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gagaagtg 8
||||||||
Sbjct: 8 gagaagtg 1
>ssa-miR-7132a-3p MIMAT0032666 Salmo salar miR-7132a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagaagt 7
|||||||
Sbjct: 2 gagaagt 8
>bbe-miR-2058-5p MIMAT0031615 Branchiostoma belcheri miR-2058-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagaagt 7
|||||||
Sbjct: 2 gagaagt 8
>bbe-miR-2057-5p MIMAT0031613 Branchiostoma belcheri miR-2057-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagaagt 7
|||||||
Sbjct: 2 gagaagt 8
>hsa-miR-4795-5p MIMAT0019968 Homo sapiens miR-4795-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagtg 8
|||||||
Sbjct: 1 agaagtg 7
>bta-miR-2284i MIMAT0011792 Bos taurus miR-2284i
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagaagt 7
|||||||
Sbjct: 1 gagaagt 7
>bfl-miR-2058-5p MIMAT0009984 Branchiostoma floridae miR-2058-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagaagt 7
|||||||
Sbjct: 2 gagaagt 8
>bfl-miR-2057 MIMAT0009983 Branchiostoma floridae miR-2057
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagaagt 7
|||||||
Sbjct: 2 gagaagt 8
>smo-miR1094b MIMAT0005248 Selaginella moellendorffii miR1094b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagaagt 7
|||||||
Sbjct: 8 gagaagt 2
>smo-miR1094a MIMAT0005247 Selaginella moellendorffii miR1094a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagaagt 7
|||||||
Sbjct: 8 gagaagt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 475
Number of extensions: 464
Number of successful extensions: 398
Number of sequences better than 100.0: 10
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
