BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-8-loop
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p                   16   6.9  
dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p        16   6.9  
sly-miR477-5p MIMAT0035483 Solanum lycopersicum miR477-5p              14      27
mdo-miR-7344-5p MIMAT0028698 Monodelphis domestica miR-7344-5p         14      27
mmu-miR-6898-3p MIMAT0027697 Mus musculus miR-6898-3p                  14      27
hsa-miR-6895-3p MIMAT0027691 Homo sapiens miR-6895-3p                  14      27
gga-miR-6577-3p MIMAT0025662 Gallus gallus miR-6577-3p                 14      27
gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p                 14      27
osa-miR1863b.2 MIMAT0020950 Oryza sativa miR1863b.2                    14      27
>bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gagagact 8
         ||||||||
Sbjct: 1 gagagact 8
>dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gagagact 8
         ||||||||
Sbjct: 8 gagagact 1
>sly-miR477-5p MIMAT0035483 Solanum lycopersicum miR477-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagagac 7
         |||||||
Sbjct: 8 gagagac 2
>mdo-miR-7344-5p MIMAT0028698 Monodelphis domestica miR-7344-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agagact 8
         |||||||
Sbjct: 8 agagact 2
>mmu-miR-6898-3p MIMAT0027697 Mus musculus miR-6898-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agagact 8
         |||||||
Sbjct: 8 agagact 2
>hsa-miR-6895-3p MIMAT0027691 Homo sapiens miR-6895-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagagac 7
         |||||||
Sbjct: 8 gagagac 2
>gga-miR-6577-3p MIMAT0025662 Gallus gallus miR-6577-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agagact 8
         |||||||
Sbjct: 1 agagact 7
>gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagagac 7
         |||||||
Sbjct: 2 gagagac 8
>osa-miR1863b.2 MIMAT0020950 Oryza sativa miR1863b.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agagact 8
         |||||||
Sbjct: 1 agagact 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 130
Number of successful extensions: 103
Number of sequences better than 100.0: 9
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)