BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9055 MIMAT0034599 Equus caballus miR-9055 14 20
ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus miR-8364s-3p 14 20
ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus miR-8364l-3p 14 20
ppc-miR-8364r-3p MIMAT0033263 Pristionchus pacificus miR-8364r-3p 14 20
mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p 14 20
mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p 14 20
asu-miR-5349-5p MIMAT0021550 Ascaris suum miR-5349-5p 14 20
aae-miR-306-3p MIMAT0014230 Aedes aegypti miR-306-3p 14 20
hsa-miR-2278 MIMAT0011778 Homo sapiens miR-2278 14 20
zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p 14 20
bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845 12 80
efu-miR-9189c MIMAT0034886 Eptesicus fuscus miR-9189c 12 80
sma-miR-281-5p MIMAT0033592 Schistosoma mansoni miR-281-5p 12 80
sma-miR-8405-5p MIMAT0033512 Schistosoma mansoni miR-8405-5p 12 80
ppc-miR-8341-5p MIMAT0033227 Pristionchus pacificus miR-8341-5p 12 80
bbe-miR-281-5p MIMAT0031660 Branchiostoma belcheri miR-281-5p 12 80
stu-miR156d-3p MIMAT0031300 Solanum tuberosum miR156d-3p 12 80
prd-miR-46-5p MIMAT0030508 Panagrellus redivivus miR-46-5p 12 80
mdo-miR-7371j-3p MIMAT0028791 Monodelphis domestica miR-7371j-3p 12 80
mdo-miR-7371e-3p MIMAT0028783 Monodelphis domestica miR-7371e-3p 12 80
mdo-miR-7371b-3p MIMAT0028775 Monodelphis domestica miR-7371b-3p 12 80
mdo-miR-7371a-3p MIMAT0028773 Monodelphis domestica miR-7371a-3p 12 80
mmu-miR-7216-5p MIMAT0028400 Mus musculus miR-7216-5p 12 80
mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p 12 80
mml-miR-7191-3p MIMAT0028341 Macaca mulatta miR-7191-3p 12 80
mml-miR-7188-3p MIMAT0028331 Macaca mulatta miR-7188-3p 12 80
mmu-miR-7083-3p MIMAT0028073 Mus musculus miR-7083-3p 12 80
mmu-miR-7030-3p MIMAT0027965 Mus musculus miR-7030-3p 12 80
mmu-miR-6944-5p MIMAT0027788 Mus musculus miR-6944-5p 12 80
hsa-miR-6805-3p MIMAT0027511 Homo sapiens miR-6805-3p 12 80
hsa-miR-6501-3p MIMAT0025459 Homo sapiens miR-6501-3p 12 80
hvu-miR6181 MIMAT0024805 Hordeum vulgare miR6181 12 80
tur-miR-281-5p MIMAT0023046 Tetranychus urticae miR-281-5p 12 80
hsa-miR-5691 MIMAT0022483 Homo sapiens miR-5691 12 80
asu-miR-46-5p MIMAT0021457 Ascaris suum miR-46-5p 12 80
mmu-miR-5108 MIMAT0020616 Mus musculus miR-5108 12 80
pma-miR-18b-3p MIMAT0019390 Petromyzon marinus miR-18b-3p 12 80
hsa-miR-4468 MIMAT0018995 Homo sapiens miR-4468 12 80
cin-miR-4071-5p MIMAT0016630 Ciona intestinalis miR-4071-5p 12 80
ahy-miR156b-3p MIMAT0016319 Arachis hypogaea miR156b-3p 12 80
aly-miR157d-3p MIMAT0017420 Arabidopsis lyrata miR157d-3p 12 80
aly-miR157c-3p MIMAT0017418 Arabidopsis lyrata miR157c-3p 12 80
aly-miR157b-3p MIMAT0017416 Arabidopsis lyrata miR157b-3p 12 80
aly-miR157a-3p MIMAT0017414 Arabidopsis lyrata miR157a-3p 12 80
aly-miR156h-3p MIMAT0017412 Arabidopsis lyrata miR156h-3p 12 80
mmu-miR-3105-5p MIMAT0014941 Mus musculus miR-3105-5p 12 80
tgu-miR-2987-3p MIMAT0014497 Taeniopygia guttata miR-2987-3p 12 80
cqu-miR-281-5p MIMAT0014358 Culex quinquefasciatus miR-281-5p 12 80
aae-miR-281-5p MIMAT0014231 Aedes aegypti miR-281-5p 12 80
rlcv-miR-rL1-33-3p MIMAT0019196 Rhesus lymphocryptovirus miR-rL1... 12 80
aqc-miR408 MIMAT0012581 Aquilegia caerulea miR408 12 80
dps-miR-2522b-3p MIMAT0012333 Drosophila pseudoobscura miR-2522b-3p 12 80
dme-miR-2490-3p MIMAT0020911 Drosophila melanogaster miR-2490-3p 12 80
bta-miR-2442 MIMAT0012017 Bos taurus miR-2442 12 80
crm-miR-46-5p MIMAT0011597 Caenorhabditis remanei miR-46-5p 12 80
lmi-miR-281-5p MIMAT0010140 Locusta migratoria miR-281-5p 12 80
dya-miR-281-1-5p MIMAT0009060 Drosophila yakuba miR-281-1-5p 12 80
dya-miR-281-2-5p MIMAT0009190 Drosophila yakuba miR-281-2-5p 12 80
dwi-miR-281-1-5p MIMAT0008994 Drosophila willistoni miR-281-1-5p 12 80
dwi-miR-281-2-5p MIMAT0009189 Drosophila willistoni miR-281-2-5p 12 80
dvi-miR-281-1-5p MIMAT0008926 Drosophila virilis miR-281-1-5p 12 80
dvi-miR-281-2-5p MIMAT0009188 Drosophila virilis miR-281-2-5p 12 80
dsi-miR-281-5p MIMAT0008905 Drosophila simulans miR-281-5p 12 80
dse-miR-281-1-5p MIMAT0008782 Drosophila sechellia miR-281-1-5p 12 80
dse-miR-281-2-5p MIMAT0009187 Drosophila sechellia miR-281-2-5p 12 80
dpe-miR-281-2-5p MIMAT0009186 Drosophila persimilis miR-281-2-5p 12 80
dpe-miR-281-1-5p MIMAT0008727 Drosophila persimilis miR-281-1-5p 12 80
dmo-miR-281-2-5p MIMAT0009185 Drosophila mojavensis miR-281-2-5p 12 80
dmo-miR-281-1-5p MIMAT0008641 Drosophila mojavensis miR-281-1-5p 12 80
dgr-miR-281-2-5p MIMAT0009184 Drosophila grimshawi miR-281-2-5p 12 80
dgr-miR-281-1-5p MIMAT0008587 Drosophila grimshawi miR-281-1-5p 12 80
der-miR-281-1-5p MIMAT0008501 Drosophila erecta miR-281-1-5p 12 80
der-miR-281-2-5p MIMAT0009183 Drosophila erecta miR-281-2-5p 12 80
dan-miR-281-1-5p MIMAT0008428 Drosophila ananassae miR-281-1-5p 12 80
dan-miR-281-2-5p MIMAT0009182 Drosophila ananassae miR-281-2-5p 12 80
tca-miR-281-5p MIMAT0008384 Tribolium castaneum miR-281-5p 12 80
bmo-miR-281-5p MIMAT0007904 Bombyx mori miR-281-5p 12 80
gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783 12 80
gga-miR-1745 MIMAT0007650 Gallus gallus miR-1745 12 80
gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p 12 80
rrv-miR-rR1-7-5p MIMAT0004415 Rhesus monkey miR-rR1-7-5p 12 80
mtr-miR156g-3p MIMAT0026728 Medicago truncatula miR156g-3p 12 80
ath-miR863-3p MIMAT0004310 Arabidopsis thaliana miR863-3p 12 80
ptc-miR473b MIMAT0002063 Populus trichocarpa miR473b 12 80
zma-miR319c-5p MIMAT0015181 Zea mays miR319c-5p 12 80
zma-miR319a-5p MIMAT0015180 Zea mays miR319a-5p 12 80
dme-miR-281-2-5p MIMAT0000349 Drosophila melanogaster miR-281-2-5p 12 80
ath-miR157c-3p MIMAT0031872 Arabidopsis thaliana miR157c-3p 12 80
ath-miR157b-3p MIMAT0031871 Arabidopsis thaliana miR157b-3p 12 80
ath-miR157a-3p MIMAT0031870 Arabidopsis thaliana miR157a-3p 12 80
cel-miR-47-5p MIMAT0015097 Caenorhabditis elegans miR-47-5p 12 80
cel-miR-46-5p MIMAT0015096 Caenorhabditis elegans miR-46-5p 12 80
>eca-miR-9055 MIMAT0034599 Equus caballus miR-9055
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagagca 7
|||||||
Sbjct: 2 gagagca 8
>ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus
miR-8364s-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagagca 7
|||||||
Sbjct: 2 gagagca 8
>ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus
miR-8364l-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagagca 7
|||||||
Sbjct: 2 gagagca 8
>ppc-miR-8364r-3p MIMAT0033263 Pristionchus pacificus
miR-8364r-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagagca 7
|||||||
Sbjct: 1 gagagca 7
>mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagagca 7
|||||||
Sbjct: 7 gagagca 1
>mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagagca 7
|||||||
Sbjct: 7 gagagca 1
>asu-miR-5349-5p MIMAT0021550 Ascaris suum miR-5349-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagagca 7
|||||||
Sbjct: 8 gagagca 2
>aae-miR-306-3p MIMAT0014230 Aedes aegypti miR-306-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagagca 7
|||||||
Sbjct: 1 gagagca 7
>hsa-miR-2278 MIMAT0011778 Homo sapiens miR-2278
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagagca 7
|||||||
Sbjct: 1 gagagca 7
>zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagagca 7
|||||||
Sbjct: 7 gagagca 1
>bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>efu-miR-9189c MIMAT0034886 Eptesicus fuscus miR-9189c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 8 agagca 3
>sma-miR-281-5p MIMAT0033592 Schistosoma mansoni miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>sma-miR-8405-5p MIMAT0033512 Schistosoma mansoni miR-8405-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 1 gagagc 6
>ppc-miR-8341-5p MIMAT0033227 Pristionchus pacificus miR-8341-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>bbe-miR-281-5p MIMAT0031660 Branchiostoma belcheri miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>stu-miR156d-3p MIMAT0031300 Solanum tuberosum miR156d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>prd-miR-46-5p MIMAT0030508 Panagrellus redivivus miR-46-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>mdo-miR-7371j-3p MIMAT0028791 Monodelphis domestica
miR-7371j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 1 agagca 6
>mdo-miR-7371e-3p MIMAT0028783 Monodelphis domestica
miR-7371e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>mdo-miR-7371b-3p MIMAT0028775 Monodelphis domestica
miR-7371b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>mdo-miR-7371a-3p MIMAT0028773 Monodelphis domestica
miR-7371a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>mmu-miR-7216-5p MIMAT0028400 Mus musculus miR-7216-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>mml-miR-7191-3p MIMAT0028341 Macaca mulatta miR-7191-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>mml-miR-7188-3p MIMAT0028331 Macaca mulatta miR-7188-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 8 agagca 3
>mmu-miR-7083-3p MIMAT0028073 Mus musculus miR-7083-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 8 agagca 3
>mmu-miR-7030-3p MIMAT0027965 Mus musculus miR-7030-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 8 agagca 3
>mmu-miR-6944-5p MIMAT0027788 Mus musculus miR-6944-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>hsa-miR-6805-3p MIMAT0027511 Homo sapiens miR-6805-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 7 agagca 2
>hsa-miR-6501-3p MIMAT0025459 Homo sapiens miR-6501-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>hvu-miR6181 MIMAT0024805 Hordeum vulgare miR6181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>tur-miR-281-5p MIMAT0023046 Tetranychus urticae miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>hsa-miR-5691 MIMAT0022483 Homo sapiens miR-5691
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 7 agagca 2
>asu-miR-46-5p MIMAT0021457 Ascaris suum miR-46-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>mmu-miR-5108 MIMAT0020616 Mus musculus miR-5108
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>pma-miR-18b-3p MIMAT0019390 Petromyzon marinus miR-18b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 8 agagca 3
>hsa-miR-4468 MIMAT0018995 Homo sapiens miR-4468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 1 agagca 6
>cin-miR-4071-5p MIMAT0016630 Ciona intestinalis miR-4071-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 8 agagca 3
>ahy-miR156b-3p MIMAT0016319 Arachis hypogaea miR156b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>aly-miR157d-3p MIMAT0017420 Arabidopsis lyrata miR157d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>aly-miR157c-3p MIMAT0017418 Arabidopsis lyrata miR157c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>aly-miR157b-3p MIMAT0017416 Arabidopsis lyrata miR157b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>aly-miR157a-3p MIMAT0017414 Arabidopsis lyrata miR157a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>aly-miR156h-3p MIMAT0017412 Arabidopsis lyrata miR156h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>mmu-miR-3105-5p MIMAT0014941 Mus musculus miR-3105-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 1 agagca 6
>tgu-miR-2987-3p MIMAT0014497 Taeniopygia guttata miR-2987-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 1 agagca 6
>cqu-miR-281-5p MIMAT0014358 Culex quinquefasciatus miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>aae-miR-281-5p MIMAT0014231 Aedes aegypti miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>rlcv-miR-rL1-33-3p MIMAT0019196 Rhesus lymphocryptovirus
miR-rL1-33-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 3 agagca 8
>aqc-miR408 MIMAT0012581 Aquilegia caerulea miR408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>dps-miR-2522b-3p MIMAT0012333 Drosophila pseudoobscura
miR-2522b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 1 agagca 6
>dme-miR-2490-3p MIMAT0020911 Drosophila melanogaster
miR-2490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>bta-miR-2442 MIMAT0012017 Bos taurus miR-2442
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagca 7
||||||
Sbjct: 1 agagca 6
>crm-miR-46-5p MIMAT0011597 Caenorhabditis remanei miR-46-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>lmi-miR-281-5p MIMAT0010140 Locusta migratoria miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dya-miR-281-1-5p MIMAT0009060 Drosophila yakuba miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dya-miR-281-2-5p MIMAT0009190 Drosophila yakuba miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dwi-miR-281-1-5p MIMAT0008994 Drosophila willistoni
miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dwi-miR-281-2-5p MIMAT0009189 Drosophila willistoni
miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dvi-miR-281-1-5p MIMAT0008926 Drosophila virilis miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dvi-miR-281-2-5p MIMAT0009188 Drosophila virilis miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dsi-miR-281-5p MIMAT0008905 Drosophila simulans miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dse-miR-281-1-5p MIMAT0008782 Drosophila sechellia miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dse-miR-281-2-5p MIMAT0009187 Drosophila sechellia miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dpe-miR-281-2-5p MIMAT0009186 Drosophila persimilis
miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dpe-miR-281-1-5p MIMAT0008727 Drosophila persimilis
miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dmo-miR-281-2-5p MIMAT0009185 Drosophila mojavensis
miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dmo-miR-281-1-5p MIMAT0008641 Drosophila mojavensis
miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dgr-miR-281-2-5p MIMAT0009184 Drosophila grimshawi miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dgr-miR-281-1-5p MIMAT0008587 Drosophila grimshawi miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>der-miR-281-1-5p MIMAT0008501 Drosophila erecta miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>der-miR-281-2-5p MIMAT0009183 Drosophila erecta miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dan-miR-281-1-5p MIMAT0008428 Drosophila ananassae miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>dan-miR-281-2-5p MIMAT0009182 Drosophila ananassae miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>tca-miR-281-5p MIMAT0008384 Tribolium castaneum miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>bmo-miR-281-5p MIMAT0007904 Bombyx mori miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>gga-miR-1745 MIMAT0007650 Gallus gallus miR-1745
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagca 7
||||||
Sbjct: 6 agagca 1
>rrv-miR-rR1-7-5p MIMAT0004415 Rhesus monkey miR-rR1-7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>mtr-miR156g-3p MIMAT0026728 Medicago truncatula miR156g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>ath-miR863-3p MIMAT0004310 Arabidopsis thaliana miR863-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>ptc-miR473b MIMAT0002063 Populus trichocarpa miR473b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>zma-miR319c-5p MIMAT0015181 Zea mays miR319c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 8 gagagc 3
>zma-miR319a-5p MIMAT0015180 Zea mays miR319a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 8 gagagc 3
>dme-miR-281-2-5p MIMAT0000349 Drosophila melanogaster
miR-281-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>ath-miR157c-3p MIMAT0031872 Arabidopsis thaliana miR157c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>ath-miR157b-3p MIMAT0031871 Arabidopsis thaliana miR157b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>ath-miR157a-3p MIMAT0031870 Arabidopsis thaliana miR157a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagagc 6
||||||
Sbjct: 6 gagagc 1
>cel-miR-47-5p MIMAT0015097 Caenorhabditis elegans miR-47-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
>cel-miR-46-5p MIMAT0015096 Caenorhabditis elegans miR-46-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagagc 6
||||||
Sbjct: 3 gagagc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 117
Number of extensions: 107
Number of successful extensions: 92
Number of sequences better than 100.0: 92
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 92
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
