BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m6-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p 16 6.9
ssa-miR-193-5p MIMAT0032445 Salmo salar miR-193-5p 14 27
cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635 14 27
ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491 14 27
mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p 14 27
mmu-miR-6957-3p MIMAT0027815 Mus musculus miR-6957-3p 14 27
dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster miR-4958-5p 14 27
mmu-miR-3471 MIMAT0015642 Mus musculus miR-3471 14 27
>mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gagatccc 8
||||||||
Sbjct: 1 gagatccc 8
>ssa-miR-193-5p MIMAT0032445 Salmo salar miR-193-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agatccc 8
|||||||
Sbjct: 8 agatccc 2
>cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agatccc 8
|||||||
Sbjct: 8 agatccc 2
>ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agatccc 8
|||||||
Sbjct: 8 agatccc 2
>mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agatccc 8
|||||||
Sbjct: 8 agatccc 2
>mmu-miR-6957-3p MIMAT0027815 Mus musculus miR-6957-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagatcc 7
|||||||
Sbjct: 8 gagatcc 2
>dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster
miR-4958-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agatccc 8
|||||||
Sbjct: 7 agatccc 1
>mmu-miR-3471 MIMAT0015642 Mus musculus miR-3471
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagatcc 7
|||||||
Sbjct: 2 gagatcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 164
Number of extensions: 155
Number of successful extensions: 61
Number of sequences better than 100.0: 8
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
