VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-3-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-9183 MIMAT0034764 Equus caballus miR-9183                      14      27
ppc-miR-8294-5p MIMAT0033101 Pristionchus pacificus miR-8294-5p        14      27
ppc-miR-8249-5p MIMAT0032962 Pristionchus pacificus miR-8249-5p        14      27
osa-miR5800 MIMAT0023269 Oryza sativa miR5800                          14      27
osa-miR5493 MIMAT0022126 Oryza sativa miR5493                          14      27
gma-miR169i-5p MIMAT0022983 Glycine max miR169i-5p                     14      27
mmu-miR-1946a MIMAT0009412 Mus musculus miR-1946a                      14      27

>eca-miR-9183 MIMAT0034764 Equus caballus miR-9183
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagccgg 7
         |||||||
Sbjct: 7 gagccgg 1



>ppc-miR-8294-5p MIMAT0033101 Pristionchus pacificus miR-8294-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagccgg 7
         |||||||
Sbjct: 8 gagccgg 2



>ppc-miR-8249-5p MIMAT0032962 Pristionchus pacificus miR-8249-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagccgg 7
         |||||||
Sbjct: 8 gagccgg 2



>osa-miR5800 MIMAT0023269 Oryza sativa miR5800
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agccggg 8
         |||||||
Sbjct: 7 agccggg 1



>osa-miR5493 MIMAT0022126 Oryza sativa miR5493
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agccggg 8
         |||||||
Sbjct: 1 agccggg 7



>gma-miR169i-5p MIMAT0022983 Glycine max miR169i-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagccgg 7
         |||||||
Sbjct: 2 gagccgg 8



>mmu-miR-1946a MIMAT0009412 Mus musculus miR-1946a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agccggg 8
         |||||||
Sbjct: 1 agccggg 7



  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 167
Number of extensions: 160
Number of successful extensions: 123
Number of sequences better than 100.0: 7
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)