BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d15-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9275 MIMAT0034912 Eptesicus fuscus miR-9275 14 20
dev-miR-D15-3p MIMAT0028188 Duck enteritis miR-D15-3p 14 20
ggo-miR-574 MIMAT0024162 Gorilla gorilla miR-574 14 20
cel-miR-5595-3p MIMAT0022314 Caenorhabditis elegans miR-5595-3p 14 20
ame-miR-3793 MIMAT0018577 Apis mellifera miR-3793 14 20
ssc-miR-574 MIMAT0013951 Sus scrofa miR-574 14 20
cfa-miR-574 MIMAT0006673 Canis familiaris miR-574 14 20
mmu-miR-574-3p MIMAT0004894 Mus musculus miR-574-3p 14 20
hsa-miR-574-3p MIMAT0003239 Homo sapiens miR-574-3p 14 20
ppc-miR-8258-5p MIMAT0032984 Pristionchus pacificus miR-8258-5p 12 80
prd-miR-7927e-5p MIMAT0030702 Panagrellus redivivus miR-7927e-5p 12 80
mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d 12 80
hsa-miR-6853-5p MIMAT0027606 Homo sapiens miR-6853-5p 12 80
gga-miR-6648-5p MIMAT0025746 Gallus gallus miR-6648-5p 12 80
ptc-miR6458 MIMAT0025182 Populus trichocarpa miR6458 12 80
asu-miR-100d-3p MIMAT0021494 Ascaris suum miR-100d-3p 12 80
gma-miR4387c MIMAT0018254 Glycine max miR4387c 12 80
mmu-miR-3104-3p MIMAT0014940 Mus musculus miR-3104-3p 12 80
mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c 12 80
mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b 12 80
mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a 12 80
gma-miR1532 MIMAT0007394 Glycine max miR1532 12 80
>efu-miR-9275 MIMAT0034912 Eptesicus fuscus miR-9275
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagcgtg 7
|||||||
Sbjct: 2 gagcgtg 8
>dev-miR-D15-3p MIMAT0028188 Duck enteritis miR-D15-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagcgtg 7
|||||||
Sbjct: 2 gagcgtg 8
>ggo-miR-574 MIMAT0024162 Gorilla gorilla miR-574
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagcgtg 7
|||||||
Sbjct: 7 gagcgtg 1
>cel-miR-5595-3p MIMAT0022314 Caenorhabditis elegans miR-5595-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagcgtg 7
|||||||
Sbjct: 2 gagcgtg 8
>ame-miR-3793 MIMAT0018577 Apis mellifera miR-3793
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagcgtg 7
|||||||
Sbjct: 2 gagcgtg 8
>ssc-miR-574 MIMAT0013951 Sus scrofa miR-574
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagcgtg 7
|||||||
Sbjct: 7 gagcgtg 1
>cfa-miR-574 MIMAT0006673 Canis familiaris miR-574
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagcgtg 7
|||||||
Sbjct: 7 gagcgtg 1
>mmu-miR-574-3p MIMAT0004894 Mus musculus miR-574-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagcgtg 7
|||||||
Sbjct: 7 gagcgtg 1
>hsa-miR-574-3p MIMAT0003239 Homo sapiens miR-574-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagcgtg 7
|||||||
Sbjct: 7 gagcgtg 1
>ppc-miR-8258-5p MIMAT0032984 Pristionchus pacificus miR-8258-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagcgt 6
||||||
Sbjct: 6 gagcgt 1
>prd-miR-7927e-5p MIMAT0030702 Panagrellus redivivus
miR-7927e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagcgt 6
||||||
Sbjct: 3 gagcgt 8
>mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 7 agcgtg 2
>hsa-miR-6853-5p MIMAT0027606 Homo sapiens miR-6853-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 1 agcgtg 6
>gga-miR-6648-5p MIMAT0025746 Gallus gallus miR-6648-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagcgt 6
||||||
Sbjct: 3 gagcgt 8
>ptc-miR6458 MIMAT0025182 Populus trichocarpa miR6458
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagcgt 6
||||||
Sbjct: 6 gagcgt 1
>asu-miR-100d-3p MIMAT0021494 Ascaris suum miR-100d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
>gma-miR4387c MIMAT0018254 Glycine max miR4387c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 1 agcgtg 6
>mmu-miR-3104-3p MIMAT0014940 Mus musculus miR-3104-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagcgt 6
||||||
Sbjct: 6 gagcgt 1
>mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 7 agcgtg 2
>mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 7 agcgtg 2
>mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 7 agcgtg 2
>gma-miR1532 MIMAT0007394 Glycine max miR1532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 8 agcgtg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 37
Number of extensions: 28
Number of successful extensions: 22
Number of sequences better than 100.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
