BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-9-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9788-3p MIMAT0037005 Sus scrofa miR-9788-3p 14 27
nve-miR-9449 MIMAT0035410 Nematostella vectensis miR-9449 14 27
sma-miR-8475-5p MIMAT0033671 Schistosoma mansoni miR-8475-5p 14 27
mmu-miR-8119 MIMAT0031425 Mus musculus miR-8119 14 27
bdi-miR7722-5p MIMAT0030170 Brachypodium distachyon miR7722-5p 14 27
hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p 14 27
gga-miR-6570-3p MIMAT0025648 Gallus gallus miR-6570-3p 14 27
osa-miR5144-3p MIMAT0021089 Oryza sativa miR5144-3p 14 27
egr-miR-4990 MIMAT0020251 Echinococcus granulosus miR-4990 14 27
hsa-miR-4784 MIMAT0019948 Homo sapiens miR-4784 14 27
hsa-miR-3150b-3p MIMAT0018194 Homo sapiens miR-3150b-3p 14 27
hsa-miR-4279 MIMAT0016909 Homo sapiens miR-4279 14 27
sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500 14 27
ppy-miR-1253 MIMAT0016178 Pongo pygmaeus miR-1253 14 27
esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p 14 27
bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p 14 27
oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus miR-1355-3p 14 27
mcmv-miR-m01-1 MIMAT0005533 Mouse cytomegalovirus miR-m01-1 14 27
>ssc-miR-9788-3p MIMAT0037005 Sus scrofa miR-9788-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 2 gaggaga 8
>nve-miR-9449 MIMAT0035410 Nematostella vectensis miR-9449
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggagat 8
|||||||
Sbjct: 8 aggagat 2
>sma-miR-8475-5p MIMAT0033671 Schistosoma mansoni miR-8475-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggagat 8
|||||||
Sbjct: 8 aggagat 2
>mmu-miR-8119 MIMAT0031425 Mus musculus miR-8119
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 1 gaggaga 7
>bdi-miR7722-5p MIMAT0030170 Brachypodium distachyon miR7722-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 7 gaggaga 1
>hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagat 8
|||||||
Sbjct: 2 aggagat 8
>gga-miR-6570-3p MIMAT0025648 Gallus gallus miR-6570-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 2 gaggaga 8
>osa-miR5144-3p MIMAT0021089 Oryza sativa miR5144-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 7 gaggaga 1
>egr-miR-4990 MIMAT0020251 Echinococcus granulosus miR-4990
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 7 gaggaga 1
>hsa-miR-4784 MIMAT0019948 Homo sapiens miR-4784
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 2 gaggaga 8
>hsa-miR-3150b-3p MIMAT0018194 Homo sapiens miR-3150b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 2 gaggaga 8
>hsa-miR-4279 MIMAT0016909 Homo sapiens miR-4279
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 8 gaggaga 2
>sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagat 8
|||||||
Sbjct: 1 aggagat 7
>ppy-miR-1253 MIMAT0016178 Pongo pygmaeus miR-1253
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 2 gaggaga 8
>esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 8 gaggaga 2
>bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 7 gaggaga 1
>oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus
miR-1355-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggaga 7
|||||||
Sbjct: 7 gaggaga 1
>mcmv-miR-m01-1 MIMAT0005533 Mouse cytomegalovirus miR-m01-1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggaga 7
|||||||
Sbjct: 2 gaggaga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 192
Number of extensions: 174
Number of successful extensions: 141
Number of sequences better than 100.0: 18
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
