BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-456 MIMAT0036933 Ophiophagus hannah miR-456 14 27
chi-miR-873-3p MIMAT0036295 Capra hircus miR-873-3p 14 27
chi-miR-485-5p MIMAT0036244 Capra hircus miR-485-5p 14 27
eca-miR-8943 MIMAT0034472 Equus caballus miR-8943 14 27
ssa-miR-92a-3-5p MIMAT0032709 Salmo salar miR-92a-3-5p 14 27
ssa-miR-456-3p MIMAT0032646 Salmo salar miR-456-3p 14 27
bdi-miR7766-3p MIMAT0030281 Brachypodium distachyon miR7766-3p 14 27
pmi-miR-2008-3p MIMAT0032182 Patiria miniata miR-2008-3p 14 27
mmu-miR-7679-5p MIMAT0029872 Mus musculus miR-7679-5p 14 27
ipu-miR-456 MIMAT0029514 Ictalurus punctatus miR-456 14 27
oan-miR-7408-5p MIMAT0028962 Ornithorhynchus anatinus miR-7408-5p 14 27
mmu-miR-6971-3p MIMAT0027845 Mus musculus miR-6971-3p 14 27
mmu-miR-6947-3p MIMAT0027795 Mus musculus miR-6947-3p 14 27
hsa-miR-6884-5p MIMAT0027668 Homo sapiens miR-6884-5p 14 27
hsa-miR-6877-3p MIMAT0027655 Homo sapiens miR-6877-3p 14 27
hsa-miR-6849-3p MIMAT0027599 Homo sapiens miR-6849-3p 14 27
gga-miR-6618-5p MIMAT0025714 Gallus gallus miR-6618-5p 14 27
prv-miR-LLT11b MIMAT0025316 Pseudorabies virus miR-LLT11b 14 27
prv-miR-LLT11a MIMAT0025315 Pseudorabies virus miR-LLT11a 14 27
rno-miR-6333 MIMAT0025074 Rattus norvegicus miR-6333 14 27
ggo-miR-485 MIMAT0024102 Gorilla gorilla miR-485 14 27
cgr-miR-92a-5p MIMAT0024009 Cricetulus griseus miR-92a-5p 14 27
hco-miR-5911c MIMAT0023397 Haemonchus contortus miR-5911c 14 27
aca-miR-456 MIMAT0021966 Anolis carolinensis miR-456 14 27
mtr-miR2592bg MIMAT0021204 Medicago truncatula miR2592bg 14 27
mtr-miR2592bf MIMAT0021203 Medicago truncatula miR2592bf 14 27
mtr-miR2592be MIMAT0021202 Medicago truncatula miR2592be 14 27
mtr-miR2592bd MIMAT0021201 Medicago truncatula miR2592bd 14 27
mtr-miR2592bc MIMAT0021200 Medicago truncatula miR2592bc 14 27
mtr-miR2592bb MIMAT0021199 Medicago truncatula miR2592bb 14 27
mtr-miR2592ba MIMAT0021198 Medicago truncatula miR2592ba 14 27
mtr-miR2592az MIMAT0021197 Medicago truncatula miR2592az 14 27
mtr-miR2592ay MIMAT0021196 Medicago truncatula miR2592ay 14 27
mtr-miR2592ax MIMAT0021195 Medicago truncatula miR2592ax 14 27
mtr-miR2592aw MIMAT0021194 Medicago truncatula miR2592aw 14 27
mtr-miR2592av MIMAT0021193 Medicago truncatula miR2592av 14 27
mtr-miR2592au MIMAT0021192 Medicago truncatula miR2592au 14 27
mtr-miR2592at MIMAT0021191 Medicago truncatula miR2592at 14 27
mtr-miR2592as MIMAT0021190 Medicago truncatula miR2592as 14 27
mtr-miR2592ar MIMAT0021189 Medicago truncatula miR2592ar 14 27
mtr-miR2592aq MIMAT0021188 Medicago truncatula miR2592aq 14 27
mtr-miR2592ap MIMAT0021187 Medicago truncatula miR2592ap 14 27
pma-miR-456 MIMAT0019554 Petromyzon marinus miR-456 14 27
oar-miR-485-5p MIMAT0019312 Ovis aries miR-485-5p 14 27
hsa-miR-4505 MIMAT0019041 Homo sapiens miR-4505 14 27
hsa-miR-4419b MIMAT0019034 Homo sapiens miR-4419b 14 27
hsa-miR-4478 MIMAT0019006 Homo sapiens miR-4478 14 27
hsa-miR-4430 MIMAT0018945 Homo sapiens miR-4430 14 27
hsa-miR-3929 MIMAT0018206 Homo sapiens miR-3929 14 27
ppy-miR-485-5p MIMAT0015902 Pongo pygmaeus miR-485-5p 14 27
mmu-miR-3083-5p MIMAT0014874 Mus musculus miR-3083-5p 14 27
tgu-miR-456-3p MIMAT0014469 Taeniopygia guttata miR-456-3p 14 27
eca-miR-485-5p MIMAT0013159 Equus caballus miR-485-5p 14 27
bta-miR-664a MIMAT0012078 Bos taurus miR-664a 14 27
bta-miR-2294 MIMAT0011802 Bos taurus miR-2294 14 27
mmu-miR-1962 MIMAT0009435 Mus musculus miR-1962 14 27
bta-miR-940 MIMAT0009386 Bos taurus miR-940 14 27
bta-miR-485 MIMAT0009328 Bos taurus miR-485 14 27
cfa-miR-485 MIMAT0006725 Canis familiaris miR-485 14 27
mml-miR-485-5p MIMAT0006342 Macaca mulatta miR-485-5p 14 27
gga-miR-1703-5p MIMAT0007595 Gallus gallus miR-1703-5p 14 27
gga-miR-1698 MIMAT0007590 Gallus gallus miR-1698 14 27
gga-miR-1589 MIMAT0007451 Gallus gallus miR-1589 14 27
gga-miR-456-3p MIMAT0003777 Gallus gallus miR-456-3p 14 27
mmu-miR-681 MIMAT0003458 Mus musculus miR-681 14 27
rno-miR-485-5p MIMAT0003203 Rattus norvegicus miR-485-5p 14 27
mmu-miR-485-5p MIMAT0003128 Mus musculus miR-485-5p 14 27
hsa-miR-485-5p MIMAT0002175 Homo sapiens miR-485-5p 14 27
dre-miR-456 MIMAT0001882 Danio rerio miR-456 14 27
>oha-miR-456 MIMAT0036933 Ophiophagus hannah miR-456
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>chi-miR-873-3p MIMAT0036295 Capra hircus miR-873-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 1 gaggctg 7
>chi-miR-485-5p MIMAT0036244 Capra hircus miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>eca-miR-8943 MIMAT0034472 Equus caballus miR-8943
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>ssa-miR-92a-3-5p MIMAT0032709 Salmo salar miR-92a-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>ssa-miR-456-3p MIMAT0032646 Salmo salar miR-456-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>bdi-miR7766-3p MIMAT0030281 Brachypodium distachyon miR7766-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>pmi-miR-2008-3p MIMAT0032182 Patiria miniata miR-2008-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggctg 7
|||||||
Sbjct: 8 gaggctg 2
>mmu-miR-7679-5p MIMAT0029872 Mus musculus miR-7679-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>ipu-miR-456 MIMAT0029514 Ictalurus punctatus miR-456
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>oan-miR-7408-5p MIMAT0028962 Ornithorhynchus anatinus
miR-7408-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 1 gaggctg 7
>mmu-miR-6971-3p MIMAT0027845 Mus musculus miR-6971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggctg 7
|||||||
Sbjct: 8 gaggctg 2
>mmu-miR-6947-3p MIMAT0027795 Mus musculus miR-6947-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggctg 7
|||||||
Sbjct: 8 gaggctg 2
>hsa-miR-6884-5p MIMAT0027668 Homo sapiens miR-6884-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>hsa-miR-6877-3p MIMAT0027655 Homo sapiens miR-6877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggctg 7
|||||||
Sbjct: 7 gaggctg 1
>hsa-miR-6849-3p MIMAT0027599 Homo sapiens miR-6849-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggctgg 8
|||||||
Sbjct: 8 aggctgg 2
>gga-miR-6618-5p MIMAT0025714 Gallus gallus miR-6618-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>prv-miR-LLT11b MIMAT0025316 Pseudorabies virus miR-LLT11b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>prv-miR-LLT11a MIMAT0025315 Pseudorabies virus miR-LLT11a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>rno-miR-6333 MIMAT0025074 Rattus norvegicus miR-6333
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>ggo-miR-485 MIMAT0024102 Gorilla gorilla miR-485
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>cgr-miR-92a-5p MIMAT0024009 Cricetulus griseus miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>hco-miR-5911c MIMAT0023397 Haemonchus contortus miR-5911c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>aca-miR-456 MIMAT0021966 Anolis carolinensis miR-456
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>mtr-miR2592bg MIMAT0021204 Medicago truncatula miR2592bg
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592bf MIMAT0021203 Medicago truncatula miR2592bf
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592be MIMAT0021202 Medicago truncatula miR2592be
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592bd MIMAT0021201 Medicago truncatula miR2592bd
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592bc MIMAT0021200 Medicago truncatula miR2592bc
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592bb MIMAT0021199 Medicago truncatula miR2592bb
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592ba MIMAT0021198 Medicago truncatula miR2592ba
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592az MIMAT0021197 Medicago truncatula miR2592az
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592ay MIMAT0021196 Medicago truncatula miR2592ay
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592ax MIMAT0021195 Medicago truncatula miR2592ax
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592aw MIMAT0021194 Medicago truncatula miR2592aw
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592av MIMAT0021193 Medicago truncatula miR2592av
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592au MIMAT0021192 Medicago truncatula miR2592au
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592at MIMAT0021191 Medicago truncatula miR2592at
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592as MIMAT0021190 Medicago truncatula miR2592as
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592ar MIMAT0021189 Medicago truncatula miR2592ar
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592aq MIMAT0021188 Medicago truncatula miR2592aq
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>mtr-miR2592ap MIMAT0021187 Medicago truncatula miR2592ap
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>pma-miR-456 MIMAT0019554 Petromyzon marinus miR-456
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>oar-miR-485-5p MIMAT0019312 Ovis aries miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>hsa-miR-4505 MIMAT0019041 Homo sapiens miR-4505
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>hsa-miR-4419b MIMAT0019034 Homo sapiens miR-4419b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 1 gaggctg 7
>hsa-miR-4478 MIMAT0019006 Homo sapiens miR-4478
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 1 gaggctg 7
>hsa-miR-4430 MIMAT0018945 Homo sapiens miR-4430
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>hsa-miR-3929 MIMAT0018206 Homo sapiens miR-3929
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 1 gaggctg 7
>ppy-miR-485-5p MIMAT0015902 Pongo pygmaeus miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>mmu-miR-3083-5p MIMAT0014874 Mus musculus miR-3083-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 1 aggctgg 7
>tgu-miR-456-3p MIMAT0014469 Taeniopygia guttata miR-456-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>eca-miR-485-5p MIMAT0013159 Equus caballus miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>bta-miR-664a MIMAT0012078 Bos taurus miR-664a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>bta-miR-2294 MIMAT0011802 Bos taurus miR-2294
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 1 gaggctg 7
>mmu-miR-1962 MIMAT0009435 Mus musculus miR-1962
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>bta-miR-940 MIMAT0009386 Bos taurus miR-940
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>bta-miR-485 MIMAT0009328 Bos taurus miR-485
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>cfa-miR-485 MIMAT0006725 Canis familiaris miR-485
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>mml-miR-485-5p MIMAT0006342 Macaca mulatta miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>gga-miR-1703-5p MIMAT0007595 Gallus gallus miR-1703-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>gga-miR-1698 MIMAT0007590 Gallus gallus miR-1698
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>gga-miR-1589 MIMAT0007451 Gallus gallus miR-1589
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggctg 7
|||||||
Sbjct: 7 gaggctg 1
>gga-miR-456-3p MIMAT0003777 Gallus gallus miR-456-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
|||||||
Sbjct: 2 aggctgg 8
>mmu-miR-681 MIMAT0003458 Mus musculus miR-681
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggctg 7
|||||||
Sbjct: 7 gaggctg 1
>rno-miR-485-5p MIMAT0003203 Rattus norvegicus miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>mmu-miR-485-5p MIMAT0003128 Mus musculus miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
|||||||
Sbjct: 2 gaggctg 8
>hsa-miR-485-5p MIMAT0002175 Homo sapiens miR-485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggctg 7
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Sbjct: 2 gaggctg 8
>dre-miR-456 MIMAT0001882 Danio rerio miR-456
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggctgg 8
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Sbjct: 2 aggctgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 266
Number of extensions: 197
Number of successful extensions: 150
Number of sequences better than 100.0: 69
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 69
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)