BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mml-miR-1241 MIMAT0005862 Macaca mulatta miR-1241 16 6.9
zma-miR171g-3p MIMAT0001741 Zea mays miR171g-3p 16 6.9
mghv-miR-M1-3-3p MIMAT0001566 Mouse gammaherpesvirus miR-M1-3-3p 16 6.9
sbi-miR171c MIMAT0001463 Sorghum bicolor miR171c 16 6.9
osa-miR171g MIMAT0001068 Oryza sativa miR171g 16 6.9
dvi-miR-9543a-5p MIMAT0035626 Drosophila virilis miR-9543a-5p 14 27
ssa-miR-125b-2-3p MIMAT0032309 Salmo salar miR-125b-2-3p 14 27
hsa-miR-7854-3p MIMAT0030429 Homo sapiens miR-7854-3p 14 27
cbn-miR-7624 MIMAT0029666 Caenorhabditis brenneri miR-7624 14 27
mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p 14 27
ath-miR5662 MIMAT0022439 Arabidopsis thaliana miR5662 14 27
aly-miR156b-3p MIMAT0017400 Arabidopsis lyrata miR156b-3p 14 27
mmu-miR-1983 MIMAT0009455 Mus musculus miR-1983 14 27
dme-miR-1016-3p MIMAT0005029 Drosophila melanogaster miR-1016-3p 14 27
>mml-miR-1241 MIMAT0005862 Macaca mulatta miR-1241
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gaggtgag 8
||||||||
Sbjct: 8 gaggtgag 1
>zma-miR171g-3p MIMAT0001741 Zea mays miR171g-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaggtgag 8
||||||||
Sbjct: 1 gaggtgag 8
>mghv-miR-M1-3-3p MIMAT0001566 Mouse gammaherpesvirus
miR-M1-3-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaggtgag 8
||||||||
Sbjct: 1 gaggtgag 8
>sbi-miR171c MIMAT0001463 Sorghum bicolor miR171c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaggtgag 8
||||||||
Sbjct: 1 gaggtgag 8
>osa-miR171g MIMAT0001068 Oryza sativa miR171g
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gaggtgag 8
||||||||
Sbjct: 1 gaggtgag 8
>dvi-miR-9543a-5p MIMAT0035626 Drosophila virilis miR-9543a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggtga 7
|||||||
Sbjct: 2 gaggtga 8
>ssa-miR-125b-2-3p MIMAT0032309 Salmo salar miR-125b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggtgag 8
|||||||
Sbjct: 2 aggtgag 8
>hsa-miR-7854-3p MIMAT0030429 Homo sapiens miR-7854-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggtga 7
|||||||
Sbjct: 2 gaggtga 8
>cbn-miR-7624 MIMAT0029666 Caenorhabditis brenneri miR-7624
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggtga 7
|||||||
Sbjct: 2 gaggtga 8
>mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggtgag 8
|||||||
Sbjct: 8 aggtgag 2
>ath-miR5662 MIMAT0022439 Arabidopsis thaliana miR5662
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaggtga 7
|||||||
Sbjct: 2 gaggtga 8
>aly-miR156b-3p MIMAT0017400 Arabidopsis lyrata miR156b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggtgag 8
|||||||
Sbjct: 8 aggtgag 2
>mmu-miR-1983 MIMAT0009455 Mus musculus miR-1983
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggtgag 8
|||||||
Sbjct: 7 aggtgag 1
>dme-miR-1016-3p MIMAT0005029 Drosophila melanogaster
miR-1016-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaggtga 7
|||||||
Sbjct: 8 gaggtga 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 146
Number of successful extensions: 98
Number of sequences better than 100.0: 14
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
