BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR828 MIMAT0033948 Amborella trichopoda miR828 16 6.9
str-miR-8379b-5p MIMAT0033469 Strongyloides ratti miR-8379b-5p 14 27
prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4 14 27
nta-miR6020a-3p MIMAT0023585 Nicotiana tabacum miR6020a-3p 14 27
isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306 14 27
cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a 14 27
>atr-miR828 MIMAT0033948 Amborella trichopoda miR828
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gagtatca 8
||||||||
Sbjct: 8 gagtatca 1
>str-miR-8379b-5p MIMAT0033469 Strongyloides ratti miR-8379b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtatca 8
|||||||
Sbjct: 7 agtatca 1
>prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagtatc 7
|||||||
Sbjct: 2 gagtatc 8
>nta-miR6020a-3p MIMAT0023585 Nicotiana tabacum miR6020a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagtatc 7
|||||||
Sbjct: 8 gagtatc 2
>isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagtatc 7
|||||||
Sbjct: 2 gagtatc 8
>cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagtatc 7
|||||||
Sbjct: 2 gagtatc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 93
Number of extensions: 86
Number of successful extensions: 35
Number of sequences better than 100.0: 6
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
