BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m11-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-1451-3p MIMAT0007325 Gallus gallus miR-1451-3p 14 20
mdv1-miR-M11-3p MIMAT0005983 Mareks disease miR-M11-3p 14 20
gra-miR7584e MIMAT0034071 Gossypium raimondii miR7584e 12 80
ppc-miR-8216-5p MIMAT0032862 Pristionchus pacificus miR-8216-5p 12 80
prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p 12 80
mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p 12 80
mmu-miR-6944-3p MIMAT0027789 Mus musculus miR-6944-3p 12 80
hme-miR-2765 MIMAT0024956 Heliconius melpomene miR-2765 12 80
mse-miR-2765 MIMAT0024470 Manduca sexta miR-2765 12 80
ame-miR-2765-5p MIMAT0023551 Apis mellifera miR-2765-5p 12 80
aca-miR-216b-3p MIMAT0021877 Anolis carolinensis miR-216b-3p 12 80
dme-miR-4944-3p MIMAT0020154 Drosophila melanogaster miR-4944-3p 12 80
hsa-miR-4653-3p MIMAT0019719 Homo sapiens miR-4653-3p 12 80
tca-miR-2765-5p MIMAT0018630 Tribolium castaneum miR-2765-5p 12 80
rlcv-miR-rL1-35-3p MIMAT0016963 Rhesus lymphocryptovirus miR-rL1... 12 80
ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600 12 80
mmu-miR-3087-3p MIMAT0014896 Mus musculus miR-3087-3p 12 80
api-miR-2765 MIMAT0014787 Acyrthosiphon pisum miR-2765 12 80
tgu-miR-1451-3p MIMAT0026958 Taeniopygia guttata miR-1451-3p 12 80
aae-miR-2765 MIMAT0014285 Aedes aegypti miR-2765 12 80
ssc-miR-935 MIMAT0013947 Sus scrofa miR-935 12 80
rno-miR-935 MIMAT0012845 Rattus norvegicus miR-935 12 80
bmo-miR-2765 MIMAT0013640 Bombyx mori miR-2765 12 80
cte-miR-216c MIMAT0013570 Capitella teleta miR-216c 12 80
cte-miR-2688-3p MIMAT0013541 Capitella teleta miR-2688-3p 12 80
cte-miR-2685-3p MIMAT0013533 Capitella teleta miR-2685-3p 12 80
dps-miR-2523 MIMAT0012311 Drosophila pseudoobscura miR-2523 12 80
crm-miR-63-5p MIMAT0011622 Caenorhabditis remanei miR-63-5p 12 80
sme-miR-2201-5p MIMAT0011423 Schmidtea mediterranea miR-2201-5p 12 80
nve-miR-2032b-3p MIMAT0009787 Nematostella vectensis miR-2032b-3p 12 80
nve-miR-2032a-3p MIMAT0009785 Nematostella vectensis miR-2032a-3p 12 80
bta-miR-935 MIMAT0009385 Bos taurus miR-935 12 80
dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p 12 80
ptr-miR-935 MIMAT0008342 Pan troglodytes miR-935 12 80
mml-miR-600 MIMAT0006457 Macaca mulatta miR-600 12 80
gga-miR-1559-3p MIMAT0026775 Gallus gallus miR-1559-3p 12 80
gma-miR1527 MIMAT0007389 Glycine max miR1527 12 80
smo-miR1084 MIMAT0005235 Selaginella moellendorffii miR1084 12 80
hsa-miR-935 MIMAT0004978 Homo sapiens miR-935 12 80
ebv-miR-BART13-3p MIMAT0003424 Epstein Barr miR-BART13-3p 12 80
dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p 12 80
cel-miR-63-5p MIMAT0015104 Caenorhabditis elegans miR-63-5p 12 80
>gga-miR-1451-3p MIMAT0007325 Gallus gallus miR-1451-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagttac 7
|||||||
Sbjct: 8 gagttac 2
>mdv1-miR-M11-3p MIMAT0005983 Mareks disease miR-M11-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttac 7
|||||||
Sbjct: 2 gagttac 8
>gra-miR7584e MIMAT0034071 Gossypium raimondii miR7584e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagtta 6
||||||
Sbjct: 3 gagtta 8
>ppc-miR-8216-5p MIMAT0032862 Pristionchus pacificus miR-8216-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>mmu-miR-6944-3p MIMAT0027789 Mus musculus miR-6944-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>hme-miR-2765 MIMAT0024956 Heliconius melpomene miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>mse-miR-2765 MIMAT0024470 Manduca sexta miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>ame-miR-2765-5p MIMAT0023551 Apis mellifera miR-2765-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>aca-miR-216b-3p MIMAT0021877 Anolis carolinensis miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>dme-miR-4944-3p MIMAT0020154 Drosophila melanogaster
miR-4944-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>hsa-miR-4653-3p MIMAT0019719 Homo sapiens miR-4653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagtta 6
||||||
Sbjct: 3 gagtta 8
>tca-miR-2765-5p MIMAT0018630 Tribolium castaneum miR-2765-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>rlcv-miR-rL1-35-3p MIMAT0016963 Rhesus lymphocryptovirus
miR-rL1-35-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 7 agttac 2
>ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 1 agttac 6
>mmu-miR-3087-3p MIMAT0014896 Mus musculus miR-3087-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>api-miR-2765 MIMAT0014787 Acyrthosiphon pisum miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>tgu-miR-1451-3p MIMAT0026958 Taeniopygia guttata miR-1451-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>aae-miR-2765 MIMAT0014285 Aedes aegypti miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>ssc-miR-935 MIMAT0013947 Sus scrofa miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>rno-miR-935 MIMAT0012845 Rattus norvegicus miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>bmo-miR-2765 MIMAT0013640 Bombyx mori miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>cte-miR-216c MIMAT0013570 Capitella teleta miR-216c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>cte-miR-2688-3p MIMAT0013541 Capitella teleta miR-2688-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>cte-miR-2685-3p MIMAT0013533 Capitella teleta miR-2685-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>dps-miR-2523 MIMAT0012311 Drosophila pseudoobscura miR-2523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>crm-miR-63-5p MIMAT0011622 Caenorhabditis remanei miR-63-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 8 gagtta 3
>sme-miR-2201-5p MIMAT0011423 Schmidtea mediterranea miR-2201-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 1 agttac 6
>nve-miR-2032b-3p MIMAT0009787 Nematostella vectensis
miR-2032b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>nve-miR-2032a-3p MIMAT0009785 Nematostella vectensis
miR-2032a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 8 agttac 3
>bta-miR-935 MIMAT0009385 Bos taurus miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 6 agttac 1
>ptr-miR-935 MIMAT0008342 Pan troglodytes miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>mml-miR-600 MIMAT0006457 Macaca mulatta miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 1 agttac 6
>gga-miR-1559-3p MIMAT0026775 Gallus gallus miR-1559-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 1 agttac 6
>gma-miR1527 MIMAT0007389 Glycine max miR1527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>smo-miR1084 MIMAT0005235 Selaginella moellendorffii miR1084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 6 gagtta 1
>hsa-miR-935 MIMAT0004978 Homo sapiens miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttac 7
||||||
Sbjct: 3 agttac 8
>ebv-miR-BART13-3p MIMAT0003424 Epstein Barr miR-BART13-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 7 agttac 2
>dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttac 7
||||||
Sbjct: 6 agttac 1
>cel-miR-63-5p MIMAT0015104 Caenorhabditis elegans miR-63-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagtta 6
||||||
Sbjct: 8 gagtta 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 49
Number of extensions: 47
Number of successful extensions: 42
Number of sequences better than 100.0: 42
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
