BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b26-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B26-5p MIMAT0031771 Herpes B miR-B26-5p 14 20
mmu-miR-1195 MIMAT0005856 Mus musculus miR-1195 14 20
bra-miR9563b-5p MIMAT0035695 Brassica rapa miR9563b-5p 12 80
ppc-miR-2253c-5p MIMAT0033001 Pristionchus pacificus miR-2253c-5p 12 80
ppe-miR7125-3p MIMAT0031537 Prunus persica miR7125-3p 12 80
prd-miR-7950a-5p MIMAT0030770 Panagrellus redivivus miR-7950a-5p 12 80
prd-miR-7950c-5p MIMAT0030712 Panagrellus redivivus miR-7950c-5p 12 80
mdm-miR7125 MIMAT0026059 Malus domestica miR7125 12 80
hsa-miR-6750-3p MIMAT0027401 Homo sapiens miR-6750-3p 12 80
hsa-miR-6716-3p MIMAT0025845 Homo sapiens miR-6716-3p 12 80
rno-miR-6323 MIMAT0025062 Rattus norvegicus miR-6323 12 80
osa-miR5818 MIMAT0023291 Oryza sativa miR5818 12 80
aca-miR-5455-3p MIMAT0022082 Anolis carolinensis miR-5455-3p 12 80
gma-miR159f-5p MIMAT0021642 Glycine max miR159f-5p 12 80
csi-miR3953 MIMAT0018496 Citrus sinensis miR3953 12 80
tca-miR-3847-5p MIMAT0018742 Tribolium castaneum miR-3847-5p 12 80
tca-miR-3829-5p MIMAT0018688 Tribolium castaneum miR-3829-5p 12 80
aly-miR4221 MIMAT0017909 Arabidopsis lyrata miR4221 12 80
hsa-miR-3168 MIMAT0015043 Homo sapiens miR-3168 12 80
api-miR-3055 MIMAT0014798 Acyrthosiphon pisum miR-3055 12 80
dsi-miR-983a-3p MIMAT0012526 Drosophila simulans miR-983a-3p 12 80
dsi-miR-969-5p MIMAT0012479 Drosophila simulans miR-969-5p 12 80
dps-miR-969-5p MIMAT0012275 Drosophila pseudoobscura miR-969-5p 12 80
bta-miR-2284o MIMAT0012068 Bos taurus miR-2284o 12 80
bta-miR-2284f MIMAT0011905 Bos taurus miR-2284f 12 80
hsv2-miR-H4-5p MIMAT0010203 Herpes Simplex miR-H4-5p 12 80
gma-miR159b-5p MIMAT0020934 Glycine max miR159b-5p 12 80
oan-miR-1395-5p MIMAT0026759 Ornithorhynchus anatinus miR-1395-5p 12 80
dme-miR-969-5p MIMAT0005485 Drosophila melanogaster miR-969-5p 12 80
>hbv-miR-B26-5p MIMAT0031771 Herpes B miR-B26-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttcg 7
|||||||
Sbjct: 2 gagttcg 8
>mmu-miR-1195 MIMAT0005856 Mus musculus miR-1195
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttcg 7
|||||||
Sbjct: 2 gagttcg 8
>bra-miR9563b-5p MIMAT0035695 Brassica rapa miR9563b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagttc 6
||||||
Sbjct: 8 gagttc 3
>ppc-miR-2253c-5p MIMAT0033001 Pristionchus pacificus
miR-2253c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 3 gagttc 8
>ppe-miR7125-3p MIMAT0031537 Prunus persica miR7125-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttcg 7
||||||
Sbjct: 6 agttcg 1
>prd-miR-7950a-5p MIMAT0030770 Panagrellus redivivus
miR-7950a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>prd-miR-7950c-5p MIMAT0030712 Panagrellus redivivus
miR-7950c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>mdm-miR7125 MIMAT0026059 Malus domestica miR7125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttcg 7
||||||
Sbjct: 6 agttcg 1
>hsa-miR-6750-3p MIMAT0027401 Homo sapiens miR-6750-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagttc 6
||||||
Sbjct: 6 gagttc 1
>hsa-miR-6716-3p MIMAT0025845 Homo sapiens miR-6716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttcg 7
||||||
Sbjct: 8 agttcg 3
>rno-miR-6323 MIMAT0025062 Rattus norvegicus miR-6323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagttc 6
||||||
Sbjct: 8 gagttc 3
>osa-miR5818 MIMAT0023291 Oryza sativa miR5818
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttcg 7
||||||
Sbjct: 7 agttcg 2
>aca-miR-5455-3p MIMAT0022082 Anolis carolinensis miR-5455-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>gma-miR159f-5p MIMAT0021642 Glycine max miR159f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>csi-miR3953 MIMAT0018496 Citrus sinensis miR3953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 3 gagttc 8
>tca-miR-3847-5p MIMAT0018742 Tribolium castaneum miR-3847-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttcg 7
||||||
Sbjct: 8 agttcg 3
>tca-miR-3829-5p MIMAT0018688 Tribolium castaneum miR-3829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 3 gagttc 8
>aly-miR4221 MIMAT0017909 Arabidopsis lyrata miR4221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 3 gagttc 8
>hsa-miR-3168 MIMAT0015043 Homo sapiens miR-3168
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>api-miR-3055 MIMAT0014798 Acyrthosiphon pisum miR-3055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttcg 7
||||||
Sbjct: 3 agttcg 8
>dsi-miR-983a-3p MIMAT0012526 Drosophila simulans miR-983a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 3 gagttc 8
>dsi-miR-969-5p MIMAT0012479 Drosophila simulans miR-969-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>dps-miR-969-5p MIMAT0012275 Drosophila pseudoobscura miR-969-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>bta-miR-2284o MIMAT0012068 Bos taurus miR-2284o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttcg 7
||||||
Sbjct: 3 agttcg 8
>bta-miR-2284f MIMAT0011905 Bos taurus miR-2284f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttcg 7
||||||
Sbjct: 3 agttcg 8
>hsv2-miR-H4-5p MIMAT0010203 Herpes Simplex miR-H4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>gma-miR159b-5p MIMAT0020934 Glycine max miR159b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
>oan-miR-1395-5p MIMAT0026759 Ornithorhynchus anatinus
miR-1395-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttcg 7
||||||
Sbjct: 8 agttcg 3
>dme-miR-969-5p MIMAT0005485 Drosophila melanogaster miR-969-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttc 6
||||||
Sbjct: 1 gagttc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 49
Number of extensions: 47
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
