BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-5
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8767b MIMAT0034203 Gossypium raimondii miR8767b 14 20
gra-miR8767a MIMAT0034202 Gossypium raimondii miR8767a 14 20
bta-miR-219 MIMAT0030444 Bos taurus miR-219 14 20
gga-miR-6559-3p MIMAT0025626 Gallus gallus miR-6559-3p 14 20
aca-miR-219-2-3p MIMAT0021886 Anolis carolinensis miR-219-2-3p 14 20
ssc-miR-219a MIMAT0020590 Sus scrofa miR-219a 14 20
ppt-miR2079 MIMAT0010016 Physcomitrella patens miR2079 14 20
ptr-miR-219-1-3p MIMAT0008074 Pan troglodytes miR-219-1-3p 14 20
mmu-miR-1897-3p MIMAT0007865 Mus musculus miR-1897-3p 14 20
mghv-miR-M1-5-5p MIMAT0001568 Mouse gammaherpesvirus miR-M1-5-5p 14 20
hsa-miR-219a-1-3p MIMAT0004567 Homo sapiens miR-219a-1-3p 14 20
oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p 12 80
dvi-miR-986-3p MIMAT0035651 Drosophila virilis miR-986-3p 12 80
eca-miR-9062 MIMAT0034607 Equus caballus miR-9062 12 80
ppc-miR-8262-5p MIMAT0033008 Pristionchus pacificus miR-8262-5p 12 80
ssa-miR-219c-3p MIMAT0032531 Salmo salar miR-219c-3p 12 80
ppe-miR8131-3p MIMAT0031559 Prunus persica miR8131-3p 12 80
stu-miR8038b-3p MIMAT0031217 Solanum tuberosum miR8038b-3p 12 80
stu-miR8038a-3p MIMAT0031216 Solanum tuberosum miR8038a-3p 12 80
bdi-miR7717c-3p MIMAT0030205 Brachypodium distachyon miR7717c-3p 12 80
mmu-miR-7230-3p MIMAT0028429 Mus musculus miR-7230-3p 12 80
ssc-miR-7140-5p MIMAT0028155 Sus scrofa miR-7140-5p 12 80
sbi-miR437x-5p MIMAT0026406 Sorghum bicolor miR437x-5p 12 80
ddi-miR-7101 MIMAT0028104 Dictyostelium discoideum miR-7101 12 80
aca-miR-5393 MIMAT0021691 Anolis carolinensis miR-5393 12 80
tca-miR-3851c-5p MIMAT0018772 Tribolium castaneum miR-3851c-5p 12 80
tca-miR-3851a-5p MIMAT0018758 Tribolium castaneum miR-3851a-5p 12 80
tca-miR-3851b-5p MIMAT0018756 Tribolium castaneum miR-3851b-5p 12 80
bmo-miR-3001 MIMAT0014665 Bombyx mori miR-3001 12 80
mml-miR-571 MIMAT0012779 Macaca mulatta miR-571 12 80
cte-miR-1990b MIMAT0013547 Capitella teleta miR-1990b 12 80
dsi-miR-2583-5p MIMAT0012527 Drosophila simulans miR-2583-5p 12 80
dsi-miR-1005-5p MIMAT0012467 Drosophila simulans miR-1005-5p 12 80
bta-miR-2363 MIMAT0011901 Bos taurus miR-2363 12 80
gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p 12 80
oan-miR-1350 MIMAT0006940 Ornithorhynchus anatinus miR-1350 12 80
sme-miR-7a-3p MIMAT0012096 Schmidtea mediterranea miR-7a-3p 12 80
dre-miR-430b-5p MIMAT0031928 Danio rerio miR-430b-5p 12 80
ath-miR405d MIMAT0001008 Arabidopsis thaliana miR405d 12 80
ath-miR405b MIMAT0001007 Arabidopsis thaliana miR405b 12 80
ath-miR405a MIMAT0001006 Arabidopsis thaliana miR405a 12 80
>gra-miR8767b MIMAT0034203 Gossypium raimondii miR8767b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagttga 7
|||||||
Sbjct: 8 gagttga 2
>gra-miR8767a MIMAT0034202 Gossypium raimondii miR8767a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagttga 7
|||||||
Sbjct: 8 gagttga 2
>bta-miR-219 MIMAT0030444 Bos taurus miR-219
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>gga-miR-6559-3p MIMAT0025626 Gallus gallus miR-6559-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>aca-miR-219-2-3p MIMAT0021886 Anolis carolinensis miR-219-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>ssc-miR-219a MIMAT0020590 Sus scrofa miR-219a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>ppt-miR2079 MIMAT0010016 Physcomitrella patens miR2079
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>ptr-miR-219-1-3p MIMAT0008074 Pan troglodytes miR-219-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>mmu-miR-1897-3p MIMAT0007865 Mus musculus miR-1897-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagttga 7
|||||||
Sbjct: 7 gagttga 1
>mghv-miR-M1-5-5p MIMAT0001568 Mouse gammaherpesvirus
miR-M1-5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>hsa-miR-219a-1-3p MIMAT0004567 Homo sapiens miR-219a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttga 7
|||||||
Sbjct: 2 gagttga 8
>oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 1 gagttg 6
>dvi-miR-986-3p MIMAT0035651 Drosophila virilis miR-986-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 1 agttga 6
>eca-miR-9062 MIMAT0034607 Equus caballus miR-9062
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ppc-miR-8262-5p MIMAT0033008 Pristionchus pacificus miR-8262-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ssa-miR-219c-3p MIMAT0032531 Salmo salar miR-219c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ppe-miR8131-3p MIMAT0031559 Prunus persica miR8131-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttga 7
||||||
Sbjct: 8 agttga 3
>stu-miR8038b-3p MIMAT0031217 Solanum tuberosum miR8038b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttga 7
||||||
Sbjct: 8 agttga 3
>stu-miR8038a-3p MIMAT0031216 Solanum tuberosum miR8038a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttga 7
||||||
Sbjct: 8 agttga 3
>bdi-miR7717c-3p MIMAT0030205 Brachypodium distachyon
miR7717c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 3 agttga 8
>mmu-miR-7230-3p MIMAT0028429 Mus musculus miR-7230-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ssc-miR-7140-5p MIMAT0028155 Sus scrofa miR-7140-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagttg 6
||||||
Sbjct: 6 gagttg 1
>sbi-miR437x-5p MIMAT0026406 Sorghum bicolor miR437x-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ddi-miR-7101 MIMAT0028104 Dictyostelium discoideum miR-7101
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 3 agttga 8
>aca-miR-5393 MIMAT0021691 Anolis carolinensis miR-5393
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>tca-miR-3851c-5p MIMAT0018772 Tribolium castaneum miR-3851c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 1 agttga 6
>tca-miR-3851a-5p MIMAT0018758 Tribolium castaneum miR-3851a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 1 agttga 6
>tca-miR-3851b-5p MIMAT0018756 Tribolium castaneum miR-3851b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 1 agttga 6
>bmo-miR-3001 MIMAT0014665 Bombyx mori miR-3001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 3 agttga 8
>mml-miR-571 MIMAT0012779 Macaca mulatta miR-571
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 1 gagttg 6
>cte-miR-1990b MIMAT0013547 Capitella teleta miR-1990b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 3 agttga 8
>dsi-miR-2583-5p MIMAT0012527 Drosophila simulans miR-2583-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agttga 7
||||||
Sbjct: 3 agttga 8
>dsi-miR-1005-5p MIMAT0012467 Drosophila simulans miR-1005-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>bta-miR-2363 MIMAT0011901 Bos taurus miR-2363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttga 7
||||||
Sbjct: 6 agttga 1
>gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 1 gagttg 6
>oan-miR-1350 MIMAT0006940 Ornithorhynchus anatinus miR-1350
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttga 7
||||||
Sbjct: 8 agttga 3
>sme-miR-7a-3p MIMAT0012096 Schmidtea mediterranea miR-7a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agttga 7
||||||
Sbjct: 6 agttga 1
>dre-miR-430b-5p MIMAT0031928 Danio rerio miR-430b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gagttg 6
||||||
Sbjct: 6 gagttg 1
>ath-miR405d MIMAT0001008 Arabidopsis thaliana miR405d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ath-miR405b MIMAT0001007 Arabidopsis thaliana miR405b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
>ath-miR405a MIMAT0001006 Arabidopsis thaliana miR405a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gagttg 6
||||||
Sbjct: 3 gagttg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 78
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
