BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR36-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p 14 27
ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p 14 27
bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p 14 27
lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p 14 27
pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p 14 27
ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b 14 27
gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p 14 27
pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p 14 27
tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p 14 27
aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b 14 27
osa-miR5147 MIMAT0021092 Oryza sativa miR5147 14 27
tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p 14 27
ssc-miR-382 MIMAT0017956 Sus scrofa miR-382 14 27
bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p 14 27
sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p 14 27
mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p 14 27
bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p 14 27
spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus miR-2009 14 27
gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p 14 27
dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p 14 27
rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p 14 27
>oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 1 gagttgt 7
>ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agttgtt 8
|||||||
Sbjct: 7 agttgtt 1
>lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agttgtt 8
|||||||
Sbjct: 1 agttgtt 7
>aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagttgt 7
|||||||
Sbjct: 7 gagttgt 1
>osa-miR5147 MIMAT0021092 Oryza sativa miR5147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gagttgt 7
|||||||
Sbjct: 7 gagttgt 1
>tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agttgtt 8
|||||||
Sbjct: 1 agttgtt 7
>ssc-miR-382 MIMAT0017956 Sus scrofa miR-382
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agttgtt 8
|||||||
Sbjct: 2 agttgtt 8
>bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agttgtt 8
|||||||
Sbjct: 1 agttgtt 7
>sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agttgtt 8
|||||||
Sbjct: 7 agttgtt 1
>mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agttgtt 8
|||||||
Sbjct: 7 agttgtt 1
>spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus
miR-2009
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 1 gagttgt 7
>dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
>rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gagttgt 7
|||||||
Sbjct: 2 gagttgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 156
Number of extensions: 135
Number of successful extensions: 97
Number of sequences better than 100.0: 21
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)