BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR36-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p            14      27
ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p               14      27
bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p          14      27
lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p         14      27
pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p               14      27
ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b                 14      27
gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p                 14      27
pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p          14      27
tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p             14      27
aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b               14      27
osa-miR5147 MIMAT0021092 Oryza sativa miR5147                          14      27
tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p           14      27
ssc-miR-382 MIMAT0017956 Sus scrofa miR-382                            14      27
bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p                 14      27
sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p        14      27
mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p             14      27
bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p          14      27
spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus miR-2009       14      27
gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p                 14      27
dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p                     14      27
rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p               14      27
>oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 1 gagttgt 7
>ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 7 agttgtt 1
>lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 1 agttgtt 7
>aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 7 gagttgt 1
>osa-miR5147 MIMAT0021092 Oryza sativa miR5147
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 7 gagttgt 1
>tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 1 agttgtt 7
>ssc-miR-382 MIMAT0017956 Sus scrofa miR-382
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 2 agttgtt 8
>bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 1 agttgtt 7
>sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 7 agttgtt 1
>mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agttgtt 8
         |||||||
Sbjct: 7 agttgtt 1
>spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus
         miR-2009
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 1 gagttgt 7
>dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
>rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gagttgt 7
         |||||||
Sbjct: 2 gagttgt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 156
Number of extensions: 135
Number of successful extensions: 97
Number of sequences better than 100.0: 21
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)