BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-19-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-19-3p MIMAT0019187 Rhesus lymphocryptovirus miR-rL1... 16 6.9
mcmv-miR-M55-1 MIMAT0005547 Mouse cytomegalovirus miR-M55-1 16 6.9
gra-miR8666 MIMAT0034037 Gossypium raimondii miR8666 14 27
prd-miR-7948d-5p MIMAT0030766 Panagrellus redivivus miR-7948d-5p 14 27
mdo-miR-2970-3p MIMAT0028671 Monodelphis domestica miR-2970-3p 14 27
mmu-miR-6900-3p MIMAT0027701 Mus musculus miR-6900-3p 14 27
cin-miR-3575-5p MIMAT0016394 Ciona intestinalis miR-3575-5p 14 27
sja-miR-3481-3p MIMAT0016283 Schistosoma japonicum miR-3481-3p 14 27
tgu-miR-2970-3p MIMAT0026966 Taeniopygia guttata miR-2970-3p 14 27
gga-miR-1720-5p MIMAT0007617 Gallus gallus miR-1720-5p 14 27
osa-miR169i-5p.2 MIMAT0020917 Oryza sativa miR169i-5p.2 14 27
>rlcv-miR-rL1-19-3p MIMAT0019187 Rhesus lymphocryptovirus
miR-rL1-19-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gatcacca 8
||||||||
Sbjct: 1 gatcacca 8
>mcmv-miR-M55-1 MIMAT0005547 Mouse cytomegalovirus miR-M55-1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatcacca 8
||||||||
Sbjct: 8 gatcacca 1
>gra-miR8666 MIMAT0034037 Gossypium raimondii miR8666
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcacca 8
|||||||
Sbjct: 8 atcacca 2
>prd-miR-7948d-5p MIMAT0030766 Panagrellus redivivus
miR-7948d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatcacc 7
|||||||
Sbjct: 8 gatcacc 2
>mdo-miR-2970-3p MIMAT0028671 Monodelphis domestica miR-2970-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatcacc 7
|||||||
Sbjct: 2 gatcacc 8
>mmu-miR-6900-3p MIMAT0027701 Mus musculus miR-6900-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcacca 8
|||||||
Sbjct: 7 atcacca 1
>cin-miR-3575-5p MIMAT0016394 Ciona intestinalis miR-3575-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcacca 8
|||||||
Sbjct: 1 atcacca 7
>sja-miR-3481-3p MIMAT0016283 Schistosoma japonicum miR-3481-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatcacc 7
|||||||
Sbjct: 7 gatcacc 1
>tgu-miR-2970-3p MIMAT0026966 Taeniopygia guttata miR-2970-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatcacc 7
|||||||
Sbjct: 2 gatcacc 8
>gga-miR-1720-5p MIMAT0007617 Gallus gallus miR-1720-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatcacc 7
|||||||
Sbjct: 2 gatcacc 8
>osa-miR169i-5p.2 MIMAT0020917 Oryza sativa miR169i-5p.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcacca 8
|||||||
Sbjct: 7 atcacca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 116
Number of extensions: 103
Number of successful extensions: 67
Number of sequences better than 100.0: 11
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
