BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-13-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-13-3p MIMAT0003443 Rhesus lymphocryptovirus miR-rL1... 16 6.9
ame-miR-9893 MIMAT0037298 Apis mellifera miR-9893 14 27
tch-miR-376b-3p MIMAT0036609 Tupaia chinensis miR-376b-3p 14 27
tch-miR-376a-3p MIMAT0036537 Tupaia chinensis miR-376a-3p 14 27
chi-miR-376d MIMAT0036189 Capra hircus miR-376d 14 27
chi-miR-376b-3p MIMAT0036186 Capra hircus miR-376b-3p 14 27
gra-miR8734 MIMAT0034139 Gossypium raimondii miR8734 14 27
stu-miR8046-5p MIMAT0030961 Solanum tuberosum miR8046-5p 14 27
ptc-miR6443 MIMAT0025246 Populus trichocarpa miR6443 14 27
ggo-miR-376b MIMAT0024193 Gorilla gorilla miR-376b 14 27
ggo-miR-376a MIMAT0024159 Gorilla gorilla miR-376a 14 27
ath-miR5633 MIMAT0022393 Arabidopsis thaliana miR5633 14 27
oar-miR-376a-3p MIMAT0019287 Ovis aries miR-376a-3p 14 27
oar-miR-376b-3p MIMAT0019285 Ovis aries miR-376b-3p 14 27
oar-miR-376d MIMAT0019281 Ovis aries miR-376d 14 27
ppy-miR-376b MIMAT0015865 Pongo pygmaeus miR-376b 14 27
ppy-miR-376a MIMAT0015864 Pongo pygmaeus miR-376a 14 27
ssc-miR-376a-3p MIMAT0015716 Sus scrofa miR-376a-3p 14 27
eca-miR-376b MIMAT0013144 Equus caballus miR-376b 14 27
eca-miR-376a MIMAT0013143 Equus caballus miR-376a 14 27
bmo-miR-2841 MIMAT0013758 Bombyx mori miR-2841 14 27
bta-miR-376a MIMAT0009946 Bos taurus miR-376a 14 27
bta-miR-376d MIMAT0010199 Bos taurus miR-376d 14 27
bta-miR-376b MIMAT0009945 Bos taurus miR-376b 14 27
cfa-miR-376b MIMAT0009887 Canis familiaris miR-376b 14 27
ptr-miR-376b MIMAT0008127 Pan troglodytes miR-376b 14 27
ptr-miR-376a MIMAT0008126 Pan troglodytes miR-376a 14 27
cfa-miR-376a MIMAT0006722 Canis familiaris miR-376a 14 27
mml-miR-376b-3p MIMAT0006304 Macaca mulatta miR-376b-3p 14 27
mml-miR-376a-3p MIMAT0006303 Macaca mulatta miR-376a-3p 14 27
ebv-miR-BART7-3p MIMAT0003416 Epstein Barr miR-BART7-3p 14 27
rno-miR-376b-3p MIMAT0003196 Rattus norvegicus miR-376b-3p 14 27
hsa-miR-376b-3p MIMAT0002172 Homo sapiens miR-376b-3p 14 27
mmu-miR-376b-3p MIMAT0001092 Mus musculus miR-376b-3p 14 27
hsa-miR-376a-3p MIMAT0000729 Homo sapiens miR-376a-3p 14 27
>rlcv-miR-rL1-13-3p MIMAT0003443 Rhesus lymphocryptovirus
miR-rL1-13-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gatcatag 8
||||||||
Sbjct: 1 gatcatag 8
>ame-miR-9893 MIMAT0037298 Apis mellifera miR-9893
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatcata 7
|||||||
Sbjct: 8 gatcata 2
>tch-miR-376b-3p MIMAT0036609 Tupaia chinensis miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>tch-miR-376a-3p MIMAT0036537 Tupaia chinensis miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>chi-miR-376d MIMAT0036189 Capra hircus miR-376d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>chi-miR-376b-3p MIMAT0036186 Capra hircus miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>gra-miR8734 MIMAT0034139 Gossypium raimondii miR8734
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatcata 7
|||||||
Sbjct: 1 gatcata 7
>stu-miR8046-5p MIMAT0030961 Solanum tuberosum miR8046-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatcata 7
|||||||
Sbjct: 7 gatcata 1
>ptc-miR6443 MIMAT0025246 Populus trichocarpa miR6443
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatcata 7
|||||||
Sbjct: 8 gatcata 2
>ggo-miR-376b MIMAT0024193 Gorilla gorilla miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ggo-miR-376a MIMAT0024159 Gorilla gorilla miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ath-miR5633 MIMAT0022393 Arabidopsis thaliana miR5633
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatcata 7
|||||||
Sbjct: 7 gatcata 1
>oar-miR-376a-3p MIMAT0019287 Ovis aries miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>oar-miR-376b-3p MIMAT0019285 Ovis aries miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>oar-miR-376d MIMAT0019281 Ovis aries miR-376d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ppy-miR-376b MIMAT0015865 Pongo pygmaeus miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ppy-miR-376a MIMAT0015864 Pongo pygmaeus miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ssc-miR-376a-3p MIMAT0015716 Sus scrofa miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>eca-miR-376b MIMAT0013144 Equus caballus miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>eca-miR-376a MIMAT0013143 Equus caballus miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>bmo-miR-2841 MIMAT0013758 Bombyx mori miR-2841
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>bta-miR-376a MIMAT0009946 Bos taurus miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>bta-miR-376d MIMAT0010199 Bos taurus miR-376d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>bta-miR-376b MIMAT0009945 Bos taurus miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>cfa-miR-376b MIMAT0009887 Canis familiaris miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ptr-miR-376b MIMAT0008127 Pan troglodytes miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ptr-miR-376a MIMAT0008126 Pan troglodytes miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>cfa-miR-376a MIMAT0006722 Canis familiaris miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>mml-miR-376b-3p MIMAT0006304 Macaca mulatta miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>mml-miR-376a-3p MIMAT0006303 Macaca mulatta miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>ebv-miR-BART7-3p MIMAT0003416 Epstein Barr miR-BART7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 2 atcatag 8
>rno-miR-376b-3p MIMAT0003196 Rattus norvegicus miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>hsa-miR-376b-3p MIMAT0002172 Homo sapiens miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>mmu-miR-376b-3p MIMAT0001092 Mus musculus miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
>hsa-miR-376a-3p MIMAT0000729 Homo sapiens miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcatag 8
|||||||
Sbjct: 1 atcatag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 184
Number of extensions: 148
Number of successful extensions: 108
Number of sequences better than 100.0: 35
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 35
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
