BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-7
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p 14 20
cfa-miR-769 MIMAT0034400 Canis familiaris miR-769 14 20
cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635 14 20
crm-miR-7599 MIMAT0029616 Caenorhabditis remanei miR-7599 14 20
ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491 14 20
mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p 14 20
gga-miR-6590-5p MIMAT0025682 Gallus gallus miR-6590-5p 14 20
mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b 14 20
mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a 14 20
hsa-miR-4713-3p MIMAT0019821 Homo sapiens miR-4713-3p 14 20
ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p 14 20
ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p 14 20
eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p 14 20
dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster miR-2492-5p 14 20
ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b 14 20
mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p 14 20
hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p 14 20
hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p 14 20
kshv-miR-K12-7-3p MIMAT0002187 Kaposi sarcoma-associated miR-K12... 14 20
ame-miR-9878 MIMAT0037282 Apis mellifera miR-9878 12 80
ame-miR-9876 MIMAT0037280 Apis mellifera miR-9876 12 80
chi-miR-3955-3p MIMAT0036204 Capra hircus miR-3955-3p 12 80
chi-miR-144-5p MIMAT0035965 Capra hircus miR-144-5p 12 80
eca-miR-9117 MIMAT0034666 Equus caballus miR-9117 12 80
pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a 12 80
sma-miR-2162-5p MIMAT0033665 Schistosoma mansoni miR-2162-5p 12 80
sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p 12 80
str-miR-5359-5p MIMAT0033352 Strongyloides ratti miR-5359-5p 12 80
ppc-miR-8304a-5p MIMAT0033132 Pristionchus pacificus miR-8304a-5p 12 80
ppc-miR-8291-5p MIMAT0033095 Pristionchus pacificus miR-8291-5p 12 80
ppc-miR-8304b-5p MIMAT0033073 Pristionchus pacificus miR-8304b-5p 12 80
ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p 12 80
ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175 12 80
bma-miR-5361 MIMAT0031753 Brugia malayi miR-5361 12 80
prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p 12 80
prd-miR-5359-5p MIMAT0030468 Panagrellus redivivus miR-5359-5p 12 80
prd-miR-7866-5p MIMAT0030458 Panagrellus redivivus miR-7866-5p 12 80
ptc-miR7835 MIMAT0030407 Populus trichocarpa miR7835 12 80
rgl-miR7807a-3p MIMAT0032251 Rehmannia glutinosa miR7807a-3p 12 80
mmu-miR-7656-5p MIMAT0029818 Mus musculus miR-7656-5p 12 80
gga-miR-7459-3p MIMAT0029073 Gallus gallus miR-7459-3p 12 80
oan-miR-7435-5p MIMAT0029024 Ornithorhynchus anatinus miR-7435-5p 12 80
mdo-miR-7266-3p MIMAT0028501 Monodelphis domestica miR-7266-3p 12 80
mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p 12 80
dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p 12 80
mdm-miR171o MIMAT0026066 Malus domestica miR171o 12 80
mmu-miR-7020-5p MIMAT0027944 Mus musculus miR-7020-5p 12 80
mmu-miR-6963-5p MIMAT0027826 Mus musculus miR-6963-5p 12 80
hsa-miR-6866-3p MIMAT0027633 Homo sapiens miR-6866-3p 12 80
hsa-miR-6728-5p MIMAT0027357 Homo sapiens miR-6728-5p 12 80
hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p 12 80
hsa-miR-6506-5p MIMAT0025468 Homo sapiens miR-6506-5p 12 80
ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471 12 80
mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364 12 80
bta-miR-1260b MIMAT0024568 Bos taurus miR-1260b 12 80
mse-miR-450 MIMAT0024497 Manduca sexta miR-450 12 80
ppy-miR-1260b MIMAT0024370 Pongo pygmaeus miR-1260b 12 80
mml-miR-1260b MIMAT0024319 Macaca mulatta miR-1260b 12 80
ggo-miR-1260b MIMAT0024240 Gorilla gorilla miR-1260b 12 80
ptr-miR-1260b MIMAT0024066 Pan troglodytes miR-1260b 12 80
ptr-miR-4654 MIMAT0024053 Pan troglodytes miR-4654 12 80
cgr-miR-1260 MIMAT0023746 Cricetulus griseus miR-1260 12 80
hco-miR-5962 MIMAT0023466 Haemonchus contortus miR-5962 12 80
hco-miR-5902-5p MIMAT0023352 Haemonchus contortus miR-5902-5p 12 80
gma-miR393b MIMAT0023170 Glycine max miR393b 12 80
aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417 12 80
asu-miR-5361-5p MIMAT0021584 Ascaris suum miR-5361-5p 12 80
asu-miR-5359-5p MIMAT0021580 Ascaris suum miR-5359-5p 12 80
mtr-miR5284h MIMAT0021342 Medicago truncatula miR5284h 12 80
mtr-miR5284b MIMAT0021336 Medicago truncatula miR5284b 12 80
mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p 12 80
hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p 12 80
dme-miR-4986-5p MIMAT0020223 Drosophila melanogaster miR-4986-5p 12 80
dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster miR-4958-5p 12 80
sko-miR-4817-5p MIMAT0020008 Saccoglossus kowalevskii miR-4817-5p 12 80
hsa-miR-4769-5p MIMAT0019922 Homo sapiens miR-4769-5p 12 80
hsa-miR-4654 MIMAT0019720 Homo sapiens miR-4654 12 80
oar-miR-3955-3p MIMAT0019246 Ovis aries miR-3955-3p 12 80
gma-miR4351 MIMAT0018240 Glycine max miR4351 12 80
hvu-miR168-3p MIMAT0018216 Hordeum vulgare miR168-3p 12 80
tca-miR-11-5p MIMAT0018854 Tribolium castaneum miR-11-5p 12 80
ppy-miR-1260a MIMAT0016184 Pongo pygmaeus miR-1260a 12 80
hsa-miR-1260b MIMAT0015041 Homo sapiens miR-1260b 12 80
tgu-miR-2973-5p MIMAT0014483 Taeniopygia guttata miR-2973-5p 12 80
eca-miR-1302e MIMAT0013010 Equus caballus miR-1302e 12 80
mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a 12 80
dsi-miR-193-5p MIMAT0012451 Drosophila simulans miR-193-5p 12 80
bta-miR-2478 MIMAT0012070 Bos taurus miR-2478 12 80
bta-miR-2418 MIMAT0011982 Bos taurus miR-2418 12 80
cbr-miR-54a-5p MIMAT0011477 Caenorhabditis briggsae miR-54a-5p 12 80
dvi-miR-317-5p MIMAT0032073 Drosophila virilis miR-317-5p 12 80
hsa-miR-1260a MIMAT0005911 Homo sapiens miR-1260a 12 80
dme-miR-193-5p MIMAT0020849 Drosophila melanogaster miR-193-5p 12 80
mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p 12 80
sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749 12 80
mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p 12 80
ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p 12 80
hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p 12 80
osa-miR168a-3p MIMAT0015122 Oryza sativa miR168a-3p 12 80
dme-miR-317-5p MIMAT0020843 Drosophila melanogaster miR-317-5p 12 80
>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>cfa-miR-769 MIMAT0034400 Canis familiaris miR-769
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>crm-miR-7599 MIMAT0029616 Caenorhabditis remanei miR-7599
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>gga-miR-6590-5p MIMAT0025682 Gallus gallus miR-6590-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>hsa-miR-4713-3p MIMAT0019821 Homo sapiens miR-4713-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 7 gatccca 1
>ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster
miR-2492-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatccca 7
|||||||
Sbjct: 8 gatccca 2
>kshv-miR-K12-7-3p MIMAT0002187 Kaposi sarcoma-associated
miR-K12-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatccca 7
|||||||
Sbjct: 2 gatccca 8
>ame-miR-9878 MIMAT0037282 Apis mellifera miR-9878
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>ame-miR-9876 MIMAT0037280 Apis mellifera miR-9876
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>chi-miR-3955-3p MIMAT0036204 Capra hircus miR-3955-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>chi-miR-144-5p MIMAT0035965 Capra hircus miR-144-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>eca-miR-9117 MIMAT0034666 Equus caballus miR-9117
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 8 gatccc 3
>pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>sma-miR-2162-5p MIMAT0033665 Schistosoma mansoni miR-2162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>str-miR-5359-5p MIMAT0033352 Strongyloides ratti miR-5359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>ppc-miR-8304a-5p MIMAT0033132 Pristionchus pacificus
miR-8304a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>ppc-miR-8291-5p MIMAT0033095 Pristionchus pacificus miR-8291-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>ppc-miR-8304b-5p MIMAT0033073 Pristionchus pacificus
miR-8304b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 6 gatccc 1
>ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 1 gatccc 6
>bma-miR-5361 MIMAT0031753 Brugia malayi miR-5361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 3 gatccc 8
>prd-miR-5359-5p MIMAT0030468 Panagrellus redivivus miR-5359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>prd-miR-7866-5p MIMAT0030458 Panagrellus redivivus miR-7866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>ptc-miR7835 MIMAT0030407 Populus trichocarpa miR7835
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>rgl-miR7807a-3p MIMAT0032251 Rehmannia glutinosa miR7807a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 7 atccca 2
>mmu-miR-7656-5p MIMAT0029818 Mus musculus miR-7656-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>gga-miR-7459-3p MIMAT0029073 Gallus gallus miR-7459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>oan-miR-7435-5p MIMAT0029024 Ornithorhynchus anatinus
miR-7435-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>mdo-miR-7266-3p MIMAT0028501 Monodelphis domestica miR-7266-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 7 atccca 2
>mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 3 gatccc 8
>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 6 gatccc 1
>mdm-miR171o MIMAT0026066 Malus domestica miR171o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>mmu-miR-7020-5p MIMAT0027944 Mus musculus miR-7020-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>mmu-miR-6963-5p MIMAT0027826 Mus musculus miR-6963-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>hsa-miR-6866-3p MIMAT0027633 Homo sapiens miR-6866-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 1 gatccc 6
>hsa-miR-6728-5p MIMAT0027357 Homo sapiens miR-6728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 7 atccca 2
>hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>hsa-miR-6506-5p MIMAT0025468 Homo sapiens miR-6506-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 3 gatccc 8
>bta-miR-1260b MIMAT0024568 Bos taurus miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>mse-miR-450 MIMAT0024497 Manduca sexta miR-450
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 6 gatccc 1
>ppy-miR-1260b MIMAT0024370 Pongo pygmaeus miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>mml-miR-1260b MIMAT0024319 Macaca mulatta miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>ggo-miR-1260b MIMAT0024240 Gorilla gorilla miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>ptr-miR-1260b MIMAT0024066 Pan troglodytes miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>ptr-miR-4654 MIMAT0024053 Pan troglodytes miR-4654
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>cgr-miR-1260 MIMAT0023746 Cricetulus griseus miR-1260
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>hco-miR-5962 MIMAT0023466 Haemonchus contortus miR-5962
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>hco-miR-5902-5p MIMAT0023352 Haemonchus contortus miR-5902-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>gma-miR393b MIMAT0023170 Glycine max miR393b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 3 atccca 8
>asu-miR-5361-5p MIMAT0021584 Ascaris suum miR-5361-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>asu-miR-5359-5p MIMAT0021580 Ascaris suum miR-5359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>mtr-miR5284h MIMAT0021342 Medicago truncatula miR5284h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 8 gatccc 3
>mtr-miR5284b MIMAT0021336 Medicago truncatula miR5284b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 8 gatccc 3
>mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>dme-miR-4986-5p MIMAT0020223 Drosophila melanogaster
miR-4986-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster
miR-4958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 6 gatccc 1
>sko-miR-4817-5p MIMAT0020008 Saccoglossus kowalevskii
miR-4817-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 7 atccca 2
>hsa-miR-4769-5p MIMAT0019922 Homo sapiens miR-4769-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>hsa-miR-4654 MIMAT0019720 Homo sapiens miR-4654
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>oar-miR-3955-3p MIMAT0019246 Ovis aries miR-3955-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>gma-miR4351 MIMAT0018240 Glycine max miR4351
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>hvu-miR168-3p MIMAT0018216 Hordeum vulgare miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 1 gatccc 6
>tca-miR-11-5p MIMAT0018854 Tribolium castaneum miR-11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>ppy-miR-1260a MIMAT0016184 Pongo pygmaeus miR-1260a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>hsa-miR-1260b MIMAT0015041 Homo sapiens miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>tgu-miR-2973-5p MIMAT0014483 Taeniopygia guttata miR-2973-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>eca-miR-1302e MIMAT0013010 Equus caballus miR-1302e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 7 atccca 2
>mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>dsi-miR-193-5p MIMAT0012451 Drosophila simulans miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>bta-miR-2478 MIMAT0012070 Bos taurus miR-2478
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 3 atccca 8
>bta-miR-2418 MIMAT0011982 Bos taurus miR-2418
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>cbr-miR-54a-5p MIMAT0011477 Caenorhabditis briggsae miR-54a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>dvi-miR-317-5p MIMAT0032073 Drosophila virilis miR-317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
>hsa-miR-1260a MIMAT0005911 Homo sapiens miR-1260a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atccca 7
||||||
Sbjct: 1 atccca 6
>dme-miR-193-5p MIMAT0020849 Drosophila melanogaster miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 7 atccca 2
>mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 3 gatccc 8
>ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatccc 6
||||||
Sbjct: 8 gatccc 3
>hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 8 atccca 3
>osa-miR168a-3p MIMAT0015122 Oryza sativa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatccc 6
||||||
Sbjct: 1 gatccc 6
>dme-miR-317-5p MIMAT0020843 Drosophila melanogaster miR-317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atccca 7
||||||
Sbjct: 6 atccca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 138
Number of extensions: 119
Number of successful extensions: 100
Number of sequences better than 100.0: 100
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 100
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
