BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8229a-3p MIMAT0032903 Pristionchus pacificus miR-8229a-3p 14 20
rrv-miR-rR1-1-5p MIMAT0004406 Rhesus monkey miR-rR1-1-5p 14 20
gma-miR9747 MIMAT0036374 Glycine max miR9747 12 80
eca-miR-9092 MIMAT0034637 Equus caballus miR-9092 12 80
eca-miR-8983 MIMAT0034520 Equus caballus miR-8983 12 80
atr-miR8601 MIMAT0033890 Amborella trichopoda miR8601 12 80
atr-miR8554 MIMAT0033825 Amborella trichopoda miR8554 12 80
str-miR-7880v-3p MIMAT0033423 Strongyloides ratti miR-7880v-3p 12 80
str-miR-7880f-3p MIMAT0033322 Strongyloides ratti miR-7880f-3p 12 80
ppc-miR-8259-5p MIMAT0032986 Pristionchus pacificus miR-8259-5p 12 80
prd-miR-7873b-5p MIMAT0030552 Panagrellus redivivus miR-7873b-5p 12 80
bdi-miR7726b-3p MIMAT0030219 Brachypodium distachyon miR7726b-3p 12 80
oan-miR-7410-3p MIMAT0028967 Ornithorhynchus anatinus miR-7410-3p 12 80
mml-miR-7182-5p MIMAT0028310 Macaca mulatta miR-7182-5p 12 80
osa-miR5506 MIMAT0022139 Oryza sativa miR5506 12 80
osa-miR5082 MIMAT0020582 Oryza sativa miR5082 12 80
dme-miR-4954-3p MIMAT0020170 Drosophila melanogaster miR-4954-3p 12 80
tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p 12 80
bta-miR-2419-5p MIMAT0011985 Bos taurus miR-2419-5p 12 80
cel-miR-1829b-5p MIMAT0006770 Caenorhabditis elegans miR-1829b-5p 12 80
>ppc-miR-8229a-3p MIMAT0032903 Pristionchus pacificus
miR-8229a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatcgca 7
|||||||
Sbjct: 1 gatcgca 7
>rrv-miR-rR1-1-5p MIMAT0004406 Rhesus monkey miR-rR1-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatcgca 7
|||||||
Sbjct: 2 gatcgca 8
>gma-miR9747 MIMAT0036374 Glycine max miR9747
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 8 atcgca 3
>eca-miR-9092 MIMAT0034637 Equus caballus miR-9092
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatcgc 6
||||||
Sbjct: 8 gatcgc 3
>eca-miR-8983 MIMAT0034520 Equus caballus miR-8983
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>atr-miR8601 MIMAT0033890 Amborella trichopoda miR8601
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>atr-miR8554 MIMAT0033825 Amborella trichopoda miR8554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>str-miR-7880v-3p MIMAT0033423 Strongyloides ratti miR-7880v-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 8 atcgca 3
>str-miR-7880f-3p MIMAT0033322 Strongyloides ratti miR-7880f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 8 atcgca 3
>ppc-miR-8259-5p MIMAT0032986 Pristionchus pacificus miR-8259-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>prd-miR-7873b-5p MIMAT0030552 Panagrellus redivivus
miR-7873b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatcgc 6
||||||
Sbjct: 8 gatcgc 3
>bdi-miR7726b-3p MIMAT0030219 Brachypodium distachyon
miR7726b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>oan-miR-7410-3p MIMAT0028967 Ornithorhynchus anatinus
miR-7410-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>mml-miR-7182-5p MIMAT0028310 Macaca mulatta miR-7182-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcgca 7
||||||
Sbjct: 1 atcgca 6
>osa-miR5506 MIMAT0022139 Oryza sativa miR5506
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatcgc 6
||||||
Sbjct: 3 gatcgc 8
>osa-miR5082 MIMAT0020582 Oryza sativa miR5082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 6 atcgca 1
>dme-miR-4954-3p MIMAT0020170 Drosophila melanogaster
miR-4954-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatcgc 6
||||||
Sbjct: 3 gatcgc 8
>tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcgca 7
||||||
Sbjct: 8 atcgca 3
>bta-miR-2419-5p MIMAT0011985 Bos taurus miR-2419-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcgca 7
||||||
Sbjct: 1 atcgca 6
>cel-miR-1829b-5p MIMAT0006770 Caenorhabditis elegans
miR-1829b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatcgc 6
||||||
Sbjct: 8 gatcgc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 23
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)