BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-309a-5p MIMAT0018750 Tribolium castaneum miR-309a-5p 14 20
mml-miR-556-5p MIMAT0006424 Macaca mulatta miR-556-5p 14 20
bdi-miR9494 MIMAT0035503 Brachypodium distachyon miR9494 12 80
bol-miR9408 MIMAT0035363 Brassica oleracea miR9408 12 80
dme-miR-9371-3p MIMAT0035206 Drosophila melanogaster miR-9371-3p 12 80
efu-miR-513 MIMAT0034971 Eptesicus fuscus miR-513 12 80
efu-miR-9278 MIMAT0034916 Eptesicus fuscus miR-9278 12 80
gra-miR8693 MIMAT0034073 Gossypium raimondii miR8693 12 80
ppc-miR-8321-3p MIMAT0033183 Pristionchus pacificus miR-8321-3p 12 80
stu-miR8028-3p MIMAT0030932 Solanum tuberosum miR8028-3p 12 80
prd-miR-7950a-5p MIMAT0030770 Panagrellus redivivus miR-7950a-5p 12 80
prd-miR-7950c-5p MIMAT0030712 Panagrellus redivivus miR-7950c-5p 12 80
mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p 12 80
cbn-miR-77 MIMAT0029778 Caenorhabditis brenneri miR-77 12 80
mdo-miR-7257-5p MIMAT0028480 Monodelphis domestica miR-7257-5p 12 80
dev-miR-D19-5p MIMAT0028194 Duck enteritis miR-D19-5p 12 80
hsa-miR-6853-3p MIMAT0027607 Homo sapiens miR-6853-3p 12 80
ame-miR-6005-5p MIMAT0023549 Apis mellifera miR-6005-5p 12 80
hco-miR-5908-3p MIMAT0023363 Haemonchus contortus miR-5908-3p 12 80
osa-miR5529 MIMAT0022164 Oryza sativa miR5529 12 80
mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293 12 80
mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253 12 80
bdi-miR5199 MIMAT0020756 Brachypodium distachyon miR5199 12 80
cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p 12 80
hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11 12 80
mtr-miR2668 MIMAT0013475 Medicago truncatula miR2668 12 80
crm-miR-77 MIMAT0011507 Caenorhabditis remanei miR-77 12 80
ptr-miR-1206 MIMAT0007960 Pan troglodytes miR-1206 12 80
hsa-miR-1206 MIMAT0005870 Homo sapiens miR-1206 12 80
cbr-miR-77 MIMAT0000485 Caenorhabditis briggsae miR-77 12 80
cel-miR-77-3p MIMAT0000049 Caenorhabditis elegans miR-77-3p 12 80
>tca-miR-309a-5p MIMAT0018750 Tribolium castaneum miR-309a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgaac 7
|||||||
Sbjct: 2 gatgaac 8
>mml-miR-556-5p MIMAT0006424 Macaca mulatta miR-556-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgaac 7
|||||||
Sbjct: 1 gatgaac 7
>bdi-miR9494 MIMAT0035503 Brachypodium distachyon miR9494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
>bol-miR9408 MIMAT0035363 Brassica oleracea miR9408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 8 gatgaa 3
>dme-miR-9371-3p MIMAT0035206 Drosophila melanogaster
miR-9371-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 8 gatgaa 3
>efu-miR-513 MIMAT0034971 Eptesicus fuscus miR-513
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgaac 7
||||||
Sbjct: 1 atgaac 6
>efu-miR-9278 MIMAT0034916 Eptesicus fuscus miR-9278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 3 gatgaa 8
>gra-miR8693 MIMAT0034073 Gossypium raimondii miR8693
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 3 gatgaa 8
>ppc-miR-8321-3p MIMAT0033183 Pristionchus pacificus miR-8321-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 8 atgaac 3
>stu-miR8028-3p MIMAT0030932 Solanum tuberosum miR8028-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 6 atgaac 1
>prd-miR-7950a-5p MIMAT0030770 Panagrellus redivivus
miR-7950a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 8 atgaac 3
>prd-miR-7950c-5p MIMAT0030712 Panagrellus redivivus
miR-7950c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 8 atgaac 3
>mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 8 gatgaa 3
>cbn-miR-77 MIMAT0029778 Caenorhabditis brenneri miR-77
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
>mdo-miR-7257-5p MIMAT0028480 Monodelphis domestica miR-7257-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgaac 7
||||||
Sbjct: 3 atgaac 8
>dev-miR-D19-5p MIMAT0028194 Duck enteritis miR-D19-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 1 gatgaa 6
>hsa-miR-6853-3p MIMAT0027607 Homo sapiens miR-6853-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 7 atgaac 2
>ame-miR-6005-5p MIMAT0023549 Apis mellifera miR-6005-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgaac 7
||||||
Sbjct: 3 atgaac 8
>hco-miR-5908-3p MIMAT0023363 Haemonchus contortus miR-5908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
>osa-miR5529 MIMAT0022164 Oryza sativa miR5529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 8 gatgaa 3
>mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 1 gatgaa 6
>mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 1 gatgaa 6
>bdi-miR5199 MIMAT0020756 Brachypodium distachyon miR5199
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 7 atgaac 2
>cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 3 gatgaa 8
>hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgaa 6
||||||
Sbjct: 3 gatgaa 8
>mtr-miR2668 MIMAT0013475 Medicago truncatula miR2668
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
>crm-miR-77 MIMAT0011507 Caenorhabditis remanei miR-77
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
>ptr-miR-1206 MIMAT0007960 Pan troglodytes miR-1206
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 7 atgaac 2
>hsa-miR-1206 MIMAT0005870 Homo sapiens miR-1206
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgaac 7
||||||
Sbjct: 7 atgaac 2
>cbr-miR-77 MIMAT0000485 Caenorhabditis briggsae miR-77
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
>cel-miR-77-3p MIMAT0000049 Caenorhabditis elegans miR-77-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgaa 6
||||||
Sbjct: 6 gatgaa 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 45
Number of extensions: 43
Number of successful extensions: 31
Number of sequences better than 100.0: 31
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
