BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m16*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR172c-5p MIMAT0037222 Aegilops tauschii miR172c-5p 14 20
efu-miR-9262 MIMAT0034882 Eptesicus fuscus miR-9262 14 20
cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725 14 20
hsa-miR-4642 MIMAT0019702 Homo sapiens miR-4642 14 20
aly-miR172a-5p MIMAT0017521 Arabidopsis lyrata miR172a-5p 14 20
bmo-miR-3415 MIMAT0015622 Bombyx mori miR-3415 14 20
dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983 14 20
gga-miR-1663-3p MIMAT0007545 Gallus gallus miR-1663-3p 14 20
mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p 14 20
ata-miR394-5p MIMAT0037234 Aegilops tauschii miR394-5p 12 80
sly-miR394-5p MIMAT0035437 Solanum lycopersicum miR394-5p 12 80
efu-miR-9318b MIMAT0035023 Eptesicus fuscus miR-9318b 12 80
efu-miR-9300 MIMAT0034968 Eptesicus fuscus miR-9300 12 80
atr-miR394 MIMAT0033936 Amborella trichopoda miR394 12 80
ppc-miR-8282b-3p MIMAT0033251 Pristionchus pacificus miR-8282b-3p 12 80
ppc-miR-8325-3p MIMAT0033195 Pristionchus pacificus miR-8325-3p 12 80
cpa-miR394b MIMAT0031816 Carica papaya miR394b 12 80
cpa-miR394a MIMAT0031815 Carica papaya miR394a 12 80
ppe-miR394b MIMAT0031476 Prunus persica miR394b 12 80
stu-miR384-5p MIMAT0031373 Solanum tuberosum miR384-5p 12 80
ptc-miR7839 MIMAT0030395 Populus trichocarpa miR7839 12 80
mdo-miR-7301-3p MIMAT0029915 Monodelphis domestica miR-7301-3p 12 80
cbn-miR-357 MIMAT0029742 Caenorhabditis brenneri miR-357 12 80
mes-miR394c MIMAT0029267 Manihot esculenta miR394c 12 80
mes-miR394b MIMAT0029266 Manihot esculenta miR394b 12 80
ssc-miR-7140-3p MIMAT0028156 Sus scrofa miR-7140-3p 12 80
cme-miR394a MIMAT0026140 Cucumis melo miR394a 12 80
cme-miR394b MIMAT0026139 Cucumis melo miR394b 12 80
mdm-miR394b MIMAT0025979 Malus domestica miR394b 12 80
mdm-miR394a MIMAT0025978 Malus domestica miR394a 12 80
mmu-miR-6339 MIMAT0025082 Mus musculus miR-6339 12 80
gma-miR394g MIMAT0024919 Glycine max miR394g 12 80
ppe-miR394a MIMAT0031167 Prunus persica miR394a 12 80
nta-miR394 MIMAT0024704 Nicotiana tabacum miR394 12 80
lus-miR394b MIMAT0027194 Linum usitatissimum miR394b 12 80
lus-miR394a MIMAT0027141 Linum usitatissimum miR394a 12 80
cca-miR394 MIMAT0024525 Cynara cardunculus miR394 12 80
mes-miR394a MIMAT0024417 Manihot esculenta miR394a 12 80
bna-miR394b MIMAT0023635 Brassica napus miR394b 12 80
bna-miR394a MIMAT0023634 Brassica napus miR394a 12 80
gma-miR394f MIMAT0023239 Glycine max miR394f 12 80
gma-miR394e MIMAT0023230 Glycine max miR394e 12 80
gma-miR394d MIMAT0023210 Glycine max miR394d 12 80
ssl-miR394 MIMAT0022515 Salvia sclarea miR394 12 80
ath-miR5020c MIMAT0022391 Arabidopsis thaliana miR5020c 12 80
hsa-miR-5588-5p MIMAT0022295 Homo sapiens miR-5588-5p 12 80
aau-miR160 MIMAT0022672 Acacia auriculiformis miR160 12 80
bdi-miR394 MIMAT0020690 Brachypodium distachyon miR394 12 80
gma-miR394c-5p MIMAT0020996 Glycine max miR394c-5p 12 80
dme-miR-4950-5p MIMAT0020162 Drosophila melanogaster miR-4950-5p 12 80
tcc-miR394b MIMAT0020424 Theobroma cacao miR394b 12 80
tcc-miR394a MIMAT0020423 Theobroma cacao miR394a 12 80
hsa-miR-4799-3p MIMAT0019977 Homo sapiens miR-4799-3p 12 80
hsa-miR-4720-5p MIMAT0019833 Homo sapiens miR-4720-5p 12 80
csi-miR394 MIMAT0018461 Citrus sinensis miR394 12 80
gma-miR394a-5p MIMAT0022974 Glycine max miR394a-5p 12 80
gma-miR394b-5p MIMAT0022973 Glycine max miR394b-5p 12 80
rno-miR-31b MIMAT0017816 Rattus norvegicus miR-31b 12 80
ahy-miR394 MIMAT0016326 Arachis hypogaea miR394 12 80
aly-miR3435-5p MIMAT0017701 Arabidopsis lyrata miR3435-5p 12 80
aly-miR394b-5p MIMAT0017545 Arabidopsis lyrata miR394b-5p 12 80
aly-miR394a-5p MIMAT0017543 Arabidopsis lyrata miR394a-5p 12 80
ghr-miR394a MIMAT0014336 Gossypium hirsutum miR394a 12 80
ghr-miR394b MIMAT0014335 Gossypium hirsutum miR394b 12 80
zma-miR169m-3p MIMAT0015324 Zea mays miR169m-3p 12 80
mtr-miR2589 MIMAT0013260 Medicago truncatula miR2589 12 80
dsi-miR-303 MIMAT0012516 Drosophila simulans miR-303 12 80
dps-miR-2503 MIMAT0012287 Drosophila pseudoobscura miR-2503 12 80
sbi-miR394b MIMAT0011349 Sorghum bicolor miR394b 12 80
nve-miR-2044-3p MIMAT0009813 Nematostella vectensis miR-2044-3p 12 80
vvi-miR394c MIMAT0006558 Vitis vinifera miR394c 12 80
vvi-miR394b MIMAT0005710 Vitis vinifera miR394b 12 80
vvi-miR394a MIMAT0005709 Vitis vinifera miR394a 12 80
ppt-miR1028c-3p MIMAT0005121 Physcomitrella patens miR1028c-3p 12 80
gga-miR-456-5p MIMAT0026645 Gallus gallus miR-456-5p 12 80
ptc-miR394b-5p MIMAT0002020 Populus trichocarpa miR394b-5p 12 80
ptc-miR394a-5p MIMAT0002019 Populus trichocarpa miR394a-5p 12 80
zma-miR394b-5p MIMAT0001697 Zea mays miR394b-5p 12 80
zma-miR394a-5p MIMAT0001696 Zea mays miR394a-5p 12 80
sbi-miR394a MIMAT0001427 Sorghum bicolor miR394a 12 80
osa-miR394 MIMAT0000958 Oryza sativa miR394 12 80
ath-miR394b-5p MIMAT0000937 Arabidopsis thaliana miR394b-5p 12 80
ath-miR394a MIMAT0000936 Arabidopsis thaliana miR394a 12 80
cel-miR-357-3p MIMAT0000699 Caenorhabditis elegans miR-357-3p 12 80
>ata-miR172c-5p MIMAT0037222 Aegilops tauschii miR172c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgcca 7
|||||||
Sbjct: 8 gatgcca 2
>efu-miR-9262 MIMAT0034882 Eptesicus fuscus miR-9262
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgcca 7
|||||||
Sbjct: 1 gatgcca 7
>cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgcca 7
|||||||
Sbjct: 7 gatgcca 1
>hsa-miR-4642 MIMAT0019702 Homo sapiens miR-4642
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgcca 7
|||||||
Sbjct: 8 gatgcca 2
>aly-miR172a-5p MIMAT0017521 Arabidopsis lyrata miR172a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgcca 7
|||||||
Sbjct: 8 gatgcca 2
>bmo-miR-3415 MIMAT0015622 Bombyx mori miR-3415
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgcca 7
|||||||
Sbjct: 1 gatgcca 7
>dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgcca 7
|||||||
Sbjct: 2 gatgcca 8
>gga-miR-1663-3p MIMAT0007545 Gallus gallus miR-1663-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgcca 7
|||||||
Sbjct: 7 gatgcca 1
>mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgcca 7
|||||||
Sbjct: 2 gatgcca 8
>ata-miR394-5p MIMAT0037234 Aegilops tauschii miR394-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>sly-miR394-5p MIMAT0035437 Solanum lycopersicum miR394-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>efu-miR-9318b MIMAT0035023 Eptesicus fuscus miR-9318b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcc 6
||||||
Sbjct: 8 gatgcc 3
>efu-miR-9300 MIMAT0034968 Eptesicus fuscus miR-9300
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcca 7
||||||
Sbjct: 1 atgcca 6
>atr-miR394 MIMAT0033936 Amborella trichopoda miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ppc-miR-8282b-3p MIMAT0033251 Pristionchus pacificus
miR-8282b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>ppc-miR-8325-3p MIMAT0033195 Pristionchus pacificus miR-8325-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>cpa-miR394b MIMAT0031816 Carica papaya miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>cpa-miR394a MIMAT0031815 Carica papaya miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ppe-miR394b MIMAT0031476 Prunus persica miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>stu-miR384-5p MIMAT0031373 Solanum tuberosum miR384-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ptc-miR7839 MIMAT0030395 Populus trichocarpa miR7839
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>mdo-miR-7301-3p MIMAT0029915 Monodelphis domestica miR-7301-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcca 7
||||||
Sbjct: 3 atgcca 8
>cbn-miR-357 MIMAT0029742 Caenorhabditis brenneri miR-357
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcca 7
||||||
Sbjct: 3 atgcca 8
>mes-miR394c MIMAT0029267 Manihot esculenta miR394c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>mes-miR394b MIMAT0029266 Manihot esculenta miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ssc-miR-7140-3p MIMAT0028156 Sus scrofa miR-7140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgcc 6
||||||
Sbjct: 3 gatgcc 8
>cme-miR394a MIMAT0026140 Cucumis melo miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>cme-miR394b MIMAT0026139 Cucumis melo miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>mdm-miR394b MIMAT0025979 Malus domestica miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>mdm-miR394a MIMAT0025978 Malus domestica miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>mmu-miR-6339 MIMAT0025082 Mus musculus miR-6339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgcc 6
||||||
Sbjct: 1 gatgcc 6
>gma-miR394g MIMAT0024919 Glycine max miR394g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ppe-miR394a MIMAT0031167 Prunus persica miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>nta-miR394 MIMAT0024704 Nicotiana tabacum miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>lus-miR394b MIMAT0027194 Linum usitatissimum miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>lus-miR394a MIMAT0027141 Linum usitatissimum miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>cca-miR394 MIMAT0024525 Cynara cardunculus miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>mes-miR394a MIMAT0024417 Manihot esculenta miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>bna-miR394b MIMAT0023635 Brassica napus miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>bna-miR394a MIMAT0023634 Brassica napus miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>gma-miR394f MIMAT0023239 Glycine max miR394f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>gma-miR394e MIMAT0023230 Glycine max miR394e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>gma-miR394d MIMAT0023210 Glycine max miR394d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ssl-miR394 MIMAT0022515 Salvia sclarea miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ath-miR5020c MIMAT0022391 Arabidopsis thaliana miR5020c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 6 atgcca 1
>hsa-miR-5588-5p MIMAT0022295 Homo sapiens miR-5588-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>aau-miR160 MIMAT0022672 Acacia auriculiformis miR160
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 6 atgcca 1
>bdi-miR394 MIMAT0020690 Brachypodium distachyon miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>gma-miR394c-5p MIMAT0020996 Glycine max miR394c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>dme-miR-4950-5p MIMAT0020162 Drosophila melanogaster
miR-4950-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcca 7
||||||
Sbjct: 3 atgcca 8
>tcc-miR394b MIMAT0020424 Theobroma cacao miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>tcc-miR394a MIMAT0020423 Theobroma cacao miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>hsa-miR-4799-3p MIMAT0019977 Homo sapiens miR-4799-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>hsa-miR-4720-5p MIMAT0019833 Homo sapiens miR-4720-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>csi-miR394 MIMAT0018461 Citrus sinensis miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>gma-miR394a-5p MIMAT0022974 Glycine max miR394a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>gma-miR394b-5p MIMAT0022973 Glycine max miR394b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>rno-miR-31b MIMAT0017816 Rattus norvegicus miR-31b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcca 7
||||||
Sbjct: 3 atgcca 8
>ahy-miR394 MIMAT0016326 Arachis hypogaea miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>aly-miR3435-5p MIMAT0017701 Arabidopsis lyrata miR3435-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 6 atgcca 1
>aly-miR394b-5p MIMAT0017545 Arabidopsis lyrata miR394b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>aly-miR394a-5p MIMAT0017543 Arabidopsis lyrata miR394a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ghr-miR394a MIMAT0014336 Gossypium hirsutum miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ghr-miR394b MIMAT0014335 Gossypium hirsutum miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>zma-miR169m-3p MIMAT0015324 Zea mays miR169m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcc 6
||||||
Sbjct: 6 gatgcc 1
>mtr-miR2589 MIMAT0013260 Medicago truncatula miR2589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcc 6
||||||
Sbjct: 6 gatgcc 1
>dsi-miR-303 MIMAT0012516 Drosophila simulans miR-303
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>dps-miR-2503 MIMAT0012287 Drosophila pseudoobscura miR-2503
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgcc 6
||||||
Sbjct: 3 gatgcc 8
>sbi-miR394b MIMAT0011349 Sorghum bicolor miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>nve-miR-2044-3p MIMAT0009813 Nematostella vectensis miR-2044-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 8 atgcca 3
>vvi-miR394c MIMAT0006558 Vitis vinifera miR394c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>vvi-miR394b MIMAT0005710 Vitis vinifera miR394b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>vvi-miR394a MIMAT0005709 Vitis vinifera miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ppt-miR1028c-3p MIMAT0005121 Physcomitrella patens miR1028c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 6 atgcca 1
>gga-miR-456-5p MIMAT0026645 Gallus gallus miR-456-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcc 6
||||||
Sbjct: 8 gatgcc 3
>ptc-miR394b-5p MIMAT0002020 Populus trichocarpa miR394b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ptc-miR394a-5p MIMAT0002019 Populus trichocarpa miR394a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>zma-miR394b-5p MIMAT0001697 Zea mays miR394b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>zma-miR394a-5p MIMAT0001696 Zea mays miR394a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>sbi-miR394a MIMAT0001427 Sorghum bicolor miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>osa-miR394 MIMAT0000958 Oryza sativa miR394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ath-miR394b-5p MIMAT0000937 Arabidopsis thaliana miR394b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>ath-miR394a MIMAT0000936 Arabidopsis thaliana miR394a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcca 7
||||||
Sbjct: 7 atgcca 2
>cel-miR-357-3p MIMAT0000699 Caenorhabditis elegans miR-357-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcca 7
||||||
Sbjct: 3 atgcca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 93
Number of successful extensions: 84
Number of sequences better than 100.0: 84
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 84
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
