BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r1-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bmo-miR-6497-3p MIMAT0025322 Bombyx mori miR-6497-3p 14 20
tch-miR-324-5p MIMAT0036596 Tupaia chinensis miR-324-5p 12 80
chi-miR-324-5p MIMAT0036135 Capra hircus miR-324-5p 12 80
bbe-miR-2071-3p MIMAT0031638 Branchiostoma belcheri miR-2071-3p 12 80
mdo-miR-7310-3p MIMAT0028619 Monodelphis domestica miR-7310-3p 12 80
mmu-miR-7238-5p MIMAT0028444 Mus musculus miR-7238-5p 12 80
ssc-miR-7134-3p MIMAT0028144 Sus scrofa miR-7134-3p 12 80
ggo-miR-324 MIMAT0024130 Gorilla gorilla miR-324 12 80
cgr-miR-324-5p MIMAT0023909 Cricetulus griseus miR-324-5p 12 80
aca-miR-2188-3p MIMAT0021883 Anolis carolinensis miR-2188-3p 12 80
hsa-miR-4787-3p MIMAT0019957 Homo sapiens miR-4787-3p 12 80
hsa-miR-4754 MIMAT0019894 Homo sapiens miR-4754 12 80
rno-miR-3584-3p MIMAT0017876 Rattus norvegicus miR-3584-3p 12 80
ppy-miR-324-5p MIMAT0015827 Pongo pygmaeus miR-324-5p 12 80
ssc-miR-324 MIMAT0013957 Sus scrofa miR-324 12 80
eca-miR-324-5p MIMAT0013033 Equus caballus miR-324-5p 12 80
dme-miR-2499-3p MIMAT0012213 Drosophila melanogaster miR-2499-3p 12 80
bta-miR-2419-5p MIMAT0011985 Bos taurus miR-2419-5p 12 80
bfl-miR-2071-5p MIMAT0019172 Branchiostoma floridae miR-2071-5p 12 80
cfa-miR-324 MIMAT0009896 Canis familiaris miR-324 12 80
bta-miR-324 MIMAT0009285 Bos taurus miR-324 12 80
mml-miR-324-5p MIMAT0006266 Macaca mulatta miR-324-5p 12 80
hsa-miR-324-5p MIMAT0000761 Homo sapiens miR-324-5p 12 80
mmu-miR-324-5p MIMAT0000555 Mus musculus miR-324-5p 12 80
rno-miR-324-5p MIMAT0000553 Rattus norvegicus miR-324-5p 12 80
>bmo-miR-6497-3p MIMAT0025322 Bombyx mori miR-6497-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgcgg 7
|||||||
Sbjct: 1 gatgcgg 7
>tch-miR-324-5p MIMAT0036596 Tupaia chinensis miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>chi-miR-324-5p MIMAT0036135 Capra hircus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>bbe-miR-2071-3p MIMAT0031638 Branchiostoma belcheri miR-2071-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcgg 7
||||||
Sbjct: 1 atgcgg 6
>mdo-miR-7310-3p MIMAT0028619 Monodelphis domestica miR-7310-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcgg 7
||||||
Sbjct: 7 atgcgg 2
>mmu-miR-7238-5p MIMAT0028444 Mus musculus miR-7238-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcgg 7
||||||
Sbjct: 1 atgcgg 6
>ssc-miR-7134-3p MIMAT0028144 Sus scrofa miR-7134-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcgg 7
||||||
Sbjct: 1 atgcgg 6
>ggo-miR-324 MIMAT0024130 Gorilla gorilla miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>cgr-miR-324-5p MIMAT0023909 Cricetulus griseus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>aca-miR-2188-3p MIMAT0021883 Anolis carolinensis miR-2188-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgcg 6
||||||
Sbjct: 1 gatgcg 6
>hsa-miR-4787-3p MIMAT0019957 Homo sapiens miR-4787-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgcg 6
||||||
Sbjct: 1 gatgcg 6
>hsa-miR-4754 MIMAT0019894 Homo sapiens miR-4754
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcgg 7
||||||
Sbjct: 1 atgcgg 6
>rno-miR-3584-3p MIMAT0017876 Rattus norvegicus miR-3584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgcgg 7
||||||
Sbjct: 8 atgcgg 3
>ppy-miR-324-5p MIMAT0015827 Pongo pygmaeus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>ssc-miR-324 MIMAT0013957 Sus scrofa miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>eca-miR-324-5p MIMAT0013033 Equus caballus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>dme-miR-2499-3p MIMAT0012213 Drosophila melanogaster
miR-2499-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcgg 7
||||||
Sbjct: 1 atgcgg 6
>bta-miR-2419-5p MIMAT0011985 Bos taurus miR-2419-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 8 gatgcg 3
>bfl-miR-2071-5p MIMAT0019172 Branchiostoma floridae miR-2071-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgcgg 7
||||||
Sbjct: 1 atgcgg 6
>cfa-miR-324 MIMAT0009896 Canis familiaris miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>bta-miR-324 MIMAT0009285 Bos taurus miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>mml-miR-324-5p MIMAT0006266 Macaca mulatta miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>hsa-miR-324-5p MIMAT0000761 Homo sapiens miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>mmu-miR-324-5p MIMAT0000555 Mus musculus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
>rno-miR-324-5p MIMAT0000553 Rattus norvegicus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgcg 6
||||||
Sbjct: 6 gatgcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 29
Number of extensions: 28
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
